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Build and Test GATK 4

Build and Test GATK 4 #2706

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Build and Test GATK 4

Build and Test GATK 4 #2706

Manually triggered June 28, 2023 20:45
@cmnbroadcmnbroad
⁠ 3b95e6b
master
Status Failure
Total duration 1h 38m 40s
Artifacts 8
This run and associated checks have been archived and are scheduled for deletion. Learn more about checks retention

gatk-tests.yml

on: workflow_dispatch
check if the environment has privileges
1s
check if the environment has privileges
build and push gatk docker to artifacts
34m 38s
build and push gatk docker to artifacts
Validate script WDLs using womtools
2m 6s
Validate script WDLs using womtools
Validate generated WDLs using womtools
13m 59s
Validate generated WDLs using womtools
Matrix: wdlTests
Matrix: test
Matrix: testOnDocker
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5 errors
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell
Process completed with exit code 1.
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell
Process completed with exit code 1.
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell
Process completed with exit code 1.
WDL test RUN_CNN_WDL on cromwell
Process completed with exit code 1.
Java 17.0.6+10 test on docker conda
Process completed with exit code 1.

Artifacts

Produced during runtime
Name Size
gatkDockerImage Expired
2.07 GB
test-results-17.0.6+10-cloud Expired
331 KB
test-results-17.0.6+10-integration Expired
4.35 MB
test-results-17.0.6+10-unit Expired
155 MB
test-results-docker-17.0.6+10-conda Expired
1.15 MB
test-results-docker-17.0.6+10-integration Expired
4.27 MB
test-results-docker-17.0.6+10-unit Expired
154 MB
test-results-docker-17.0.6+10-variantcalling Expired
12.3 MB