Build and Test GATK 4 #2706

Job	Run time
check if the environment has privileges	1s
Validate script WDLs using womtools	2m 6s
Validate generated WDLs using womtools	13m 59s
build and push gatk docker to artifacts	34m 38s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell	20m 12s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell	20m 33s
WDL test RUN_CNV_SOMATIC_WDL on cromwell	35m 17s
WDL test RUN_M2_WDL on cromwell	27m 23s
WDL test RUN_CNN_WDL on cromwell	23m 16s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell	19m 27s
Java 17.0.6+10 build and test cloud	29m 5s
Java 17.0.6+10 build and test integration	41m 34s
Java 17.0.6+10 build and test unit	27m 6s
Java 17.0.6+10 test on docker integration	1h 3m 41s
Java 17.0.6+10 test on docker unit	35m 27s
Java 17.0.6+10 test on docker variantcalling	43m 55s
Java 17.0.6+10 test on docker conda	22m 4s
	7h 39m 44s

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