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tools_optitype_dna.cwl
Travis CI User edited this page Feb 4, 2020
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Run optitype on dna samples
mgibio/immuno_tools-cwl:1.0.1
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| optitype_name | A prefix that will be used to name all files produced by the script | string? | ||
| cram | File to be HLA-typed | File | ||
| reference | Reference fasta used to make the cram | ['string', 'File'] | ['.fai'] |
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| optitype_tsv | File | |||
| optitype_plot | File |