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subworkflows_cellranger_mkfastq_and_count.cwl
Travis CI User edited this page Feb 24, 2021
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running cellranger mkfastq and count
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| bcl_directory | Directory | |||
| chemistry | string? | |||
| reference | Directory | |||
| sample_name | string | |||
| simple_sample_csv | File |
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| counts_out_dir | Directory | |||
| fastqs | Directory | |||
| samplesheet | File |
| Name | CWL Run |
|---|---|
| mkfastq | tools/cellranger_mkfastq.cwl |
| count | tools/cellranger_count.cwl |