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Jason Walker edited this page Feb 4, 2020 · 11 revisions

Overview

The McDonnell Genome Institute (MGI) and collaborating labs and departments of Washington University School of Medicine share Common Workflow Language (CWL) workflow definitions focused on reusable, reproducible analysis pipelines for genomics data.

Featured Workflows

Whole Genome Clinical Assay

This section outlines the Whole Genome Clinical Assay developed at the McDonnell Genome Institute with assistance from the Institute of Clinical and Translational Sciences at WUSM.

  1. Pipelines
    1. Whole Genome Sequencing Clinical Assay
  2. Background - Getting Started
    1. Module 1 - Installs and Downloads
    1. Introduction
    1. Module 2 - Alignment
    2. Alignment
    1. Module 2 - Variant Detection
    1. SNVs and Small Indels

Table of Contents

Tools

Subworkflows

Workflows

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