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Overview

The McDonnell Genome Institute (MGI) and collaborating labs and departments of Washington University School of Medicine share Common Workflow Language (CWL) workflow definitions focused on reusable, reproducible analysis pipelines for genomics data.

Featured Pipelines

Whole Genome Clinical Assay

This section outlines the Whole Genome Sequencing (WGS) Clinical Assay developed at the McDonnell Genome Institute with support from the Institute of Clinical and Translational Sciences (ICTS) at WUSM.

Table of Contents

Tools

All tools have auto-generated documentation, each page populated with the source CWL formatted documentation.

Subworkflows

All subworkflows have auto-generated documentation, each page populated with the source CWL formatted documentation.

Pipelines

All pipelines have auto-generated documentation, each page populated with the source CWL formatted documentation.