Skip to content

Actions: broadinstitute/gatk

Actions

Build and Test GATK 4

Actions

Loading...
Loading

Show workflow options

Create status badge

Loading
gatk-tests.yml
1,952 workflow runs
1,952 workflow runs

Filter by Event

Filter by Status

Filter by Branch

Filter by Actor

Bulk ingest: single FOFN + Quickstart + Beta [VS-962] [VS-984] [VS-982] Build and Test GATK 4 #2761: Pull request #8404 synchronize by mcovarr
July 11, 2023 23:22 1h 13m 11s vs_962_there_can_be_only_one
vs_962_there_can_be_only_one
July 11, 2023 23:22 1h 13m 11s
Bulk ingest: single FOFN + Quickstart + Beta [VS-962] [VS-984] [VS-982] Build and Test GATK 4 #2760: Pull request #8404 synchronize by mcovarr
July 11, 2023 23:12 1h 7m 10s vs_962_there_can_be_only_one
vs_962_there_can_be_only_one
July 11, 2023 23:12 1h 7m 10s
Bulk ingest: single FOFN + Quickstart + Beta [VS-962] [VS-984] [VS-982] Build and Test GATK 4 #2759: Pull request #8404 synchronize by mcovarr
July 11, 2023 22:42 1h 10m 0s vs_962_there_can_be_only_one
vs_962_there_can_be_only_one
July 11, 2023 22:42 1h 10m 0s
Bulk ingest: single FOFN + Quickstart + Beta [VS-962] [VS-984] [VS-982] Build and Test GATK 4 #2758: Pull request #8404 synchronize by mcovarr
July 11, 2023 21:05 1h 26m 52s vs_962_there_can_be_only_one
vs_962_there_can_be_only_one
July 11, 2023 21:05 1h 26m 52s
change runtime attrs to args in MT pipeline (#8413) Build and Test GATK 4 #2757: Commit e0090de pushed by meganshand
July 11, 2023 20:19 1h 31m 38s master
master
July 11, 2023 20:19 1h 31m 38s
Add support for breakend replacement alleles in SVCluster Build and Test GATK 4 #2756: Pull request #8408 synchronize by mwalker174
July 11, 2023 19:49 1h 23m 58s mw_collapse_bnd_alleles
mw_collapse_bnd_alleles
July 11, 2023 19:49 1h 23m 58s
change runtime attrs to args Build and Test GATK 4 #2755: Pull request #8413 synchronize by dyeramosu
July 11, 2023 18:34 1h 22m 45s runtime-atts-to-args
runtime-atts-to-args
July 11, 2023 18:34 1h 22m 45s
change runtime attrs to args Build and Test GATK 4 #2754: Pull request #8413 opened by dyeramosu
July 11, 2023 18:07 1h 32m 4s runtime-atts-to-args
runtime-atts-to-args
July 11, 2023 18:07 1h 32m 4s
VS-1007 - Use default names for VQSR-Lite generated code. Build and Test GATK 4 #2753: Pull request #8412 synchronize by gbggrant
July 11, 2023 16:43 1h 23m 37s gg_VS-1007_UpdateVQSRLiteNaming
gg_VS-1007_UpdateVQSRLiteNaming
July 11, 2023 16:43 1h 23m 37s
Update the Intel GKL to the latest release, 0.8.11 (#8409) Build and Test GATK 4 #2752: Commit 9216207 pushed by droazen
July 11, 2023 16:09 1h 24m 56s master
master
July 11, 2023 16:09 1h 24m 56s
VS-1007 - Use default names for VQSR-Lite generated code. Build and Test GATK 4 #2751: Pull request #8412 opened by gbggrant
July 11, 2023 15:43 1h 17m 18s gg_VS-1007_UpdateVQSRLiteNaming
gg_VS-1007_UpdateVQSRLiteNaming
July 11, 2023 15:43 1h 17m 18s
ReblockGVCFs cleanup Build and Test GATK 4 #2750: Pull request #8411 opened by meganshand
July 11, 2023 15:00 1h 18m 8s ms_reblock
ms_reblock
July 11, 2023 15:00 1h 18m 8s
The VariantFiltration docs said that you can specify that it should remove the filtered variants, which does not seem to be accurate Build and Test GATK 4 #2749: Pull request #8410 opened by KevinCLydon
July 11, 2023 14:23 1h 37m 34s kl_inaccurate_variantfiltration_docs
kl_inaccurate_variantfiltration_docs
July 11, 2023 14:23 1h 37m 34s
Bulk ingest: single FOFN + Quickstart + Beta [VS-962] [VS-984] [VS-982] Build and Test GATK 4 #2748: Pull request #8404 synchronize by mcovarr
July 10, 2023 22:12 1h 10m 40s vs_962_there_can_be_only_one
vs_962_there_can_be_only_one
July 10, 2023 22:12 1h 10m 40s
Bulk ingest: single FOFN + Quickstart + Beta [VS-962] [VS-984] [VS-982] Build and Test GATK 4 #2747: Pull request #8404 synchronize by mcovarr
July 10, 2023 21:14 1h 20m 32s vs_962_there_can_be_only_one
vs_962_there_can_be_only_one
July 10, 2023 21:14 1h 20m 32s
Bulk ingest: single FOFN + Quickstart + Beta [VS-962] [VS-984] [VS-982] Build and Test GATK 4 #2746: Pull request #8404 synchronize by mcovarr
July 10, 2023 19:55 1h 20m 4s vs_962_there_can_be_only_one
vs_962_there_can_be_only_one
July 10, 2023 19:55 1h 20m 4s
Build and Test GATK 4 Build and Test GATK 4 #2745: Manually run by meganshand
July 10, 2023 19:05 1h 18m 30s ms_g_length_annots
ms_g_length_annots
July 10, 2023 19:05 1h 18m 30s
Update the Intel GKL to the latest release, 0.8.11 Build and Test GATK 4 #2744: Pull request #8409 opened by droazen
July 10, 2023 18:56 1h 31m 3s dr_upgrade_gkl_to_0.8.11
dr_upgrade_gkl_to_0.8.11
July 10, 2023 18:56 1h 31m 3s
Changed ReadNameReadFilter to support mulitple readname inputs (#8405) Build and Test GATK 4 #2743: Commit a959ceb pushed by droazen
July 10, 2023 18:50 1h 28m 32s master
master
July 10, 2023 18:50 1h 28m 32s
Add support for breakend replacement alleles in SVCluster Build and Test GATK 4 #2742: Pull request #8408 opened by mwalker174
July 10, 2023 18:39 1h 19m 41s mw_collapse_bnd_alleles
mw_collapse_bnd_alleles
July 10, 2023 18:39 1h 19m 41s
Allow LocatableXsvFuncotationFactory to read gzipped files (#8363) Build and Test GATK 4 #2741: Commit 810326c pushed by droazen
July 10, 2023 18:26 1h 18m 32s master
master
July 10, 2023 18:26 1h 18m 32s
created variable for user to specify java heap size in picard in MT p… Build and Test GATK 4 #2740: Commit 66e35bb pushed by meganshand
July 10, 2023 17:06 1h 22m 29s master
master
July 10, 2023 17:06 1h 22m 29s
created variable for user to specify java heap size in picard Build and Test GATK 4 #2739: Pull request #8406 synchronize by dyeramosu
July 10, 2023 15:21 1h 15m 57s add-java-heap-variable
add-java-heap-variable
July 10, 2023 15:21 1h 15m 57s
Build and Test GATK 4 Build and Test GATK 4 #2738: Manually run by meganshand
July 10, 2023 15:20 1h 30m 49s ms_g_length_annots
ms_g_length_annots
July 10, 2023 15:20 1h 30m 49s
Bulk ingest: single FOFN + Quickstart + Beta [VS-962] [VS-984] [VS-982] Build and Test GATK 4 #2737: Pull request #8404 synchronize by mcovarr
July 8, 2023 18:01 1h 20m 46s vs_962_there_can_be_only_one
vs_962_there_can_be_only_one
July 8, 2023 18:01 1h 20m 46s
ProTip! You can narrow down the results and go further in time using created:<2023-07-08 or the other filters available.