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Merge master to ah var store 2023-07-18 [DRAFT] Build and Test GATK 4 #2812: Pull request #8425 synchronize by mcovarr
July 18, 2023 21:49 1h 16m 31s merge_master_to_ah_var_store_2023_07_18
merge_master_to_ah_var_store_2023_07_18
July 18, 2023 21:49 1h 16m 31s
VS-991. Wire interval list from Joint Calling through to other workflows Build and Test GATK 4 #2811: Pull request #8426 opened by gbggrant
July 18, 2023 20:31 1h 16m 40s gg_VS-991_IntervalListAWiring
gg_VS-991_IntervalListAWiring
July 18, 2023 20:31 1h 16m 40s
Merge master to ah var store 2023-07-18 [DRAFT] Build and Test GATK 4 #2810: Pull request #8425 synchronize by mcovarr
July 18, 2023 20:06 1h 19m 41s merge_master_to_ah_var_store_2023_07_18
merge_master_to_ah_var_store_2023_07_18
July 18, 2023 20:06 1h 19m 41s
Merge master to ah var store 2023-07-18 [DRAFT] Build and Test GATK 4 #2809: Pull request #8425 synchronize by mcovarr
July 18, 2023 19:19 1h 30m 8s merge_master_to_ah_var_store_2023_07_18
merge_master_to_ah_var_store_2023_07_18
July 18, 2023 19:19 1h 30m 8s
Merge master to ah var store 2023-07-18 [DRAFT] Build and Test GATK 4 #2808: Pull request #8425 opened by mcovarr
July 18, 2023 19:12 1h 29m 50s merge_master_to_ah_var_store_2023_07_18
merge_master_to_ah_var_store_2023_07_18
July 18, 2023 19:12 1h 29m 50s
VS-1009 Add SCORE to VQSR Lite VCF Build and Test GATK 4 #2807: Pull request #8423 synchronize by gbggrant
July 18, 2023 17:40 1h 5m 41s gg_VS-1xxx_AddScoreToVQSRLiteVCF
gg_VS-1xxx_AddScoreToVQSRLiteVCF
July 18, 2023 17:40 1h 5m 41s
VS-1009 Add SCORE to VQSR Lite VCF Build and Test GATK 4 #2806: Pull request #8423 synchronize by gbggrant
July 18, 2023 02:01 44m 49s gg_VS-1xxx_AddScoreToVQSRLiteVCF
gg_VS-1xxx_AddScoreToVQSRLiteVCF
July 18, 2023 02:01 44m 49s
pin hail version in the integration test Build and Test GATK 4 #2805: Pull request #8424 opened by RoriCremer
July 17, 2023 21:28 8m 51s rc-vs-855-pin-hail
rc-vs-855-pin-hail
July 17, 2023 21:28 8m 51s
Add haploid support to GnarlyGenotyper (#7750) Build and Test GATK 4 #2804: Commit 7d900f5 pushed by ldgauthier
July 17, 2023 19:16 1h 29m 36s master
master
July 17, 2023 19:16 1h 29m 36s
VS-1009 Add SCORE to VQSR Lite VCF Build and Test GATK 4 #2803: Pull request #8423 opened by gbggrant
July 17, 2023 19:12 1h 7m 53s gg_VS-1xxx_AddScoreToVQSRLiteVCF
gg_VS-1xxx_AddScoreToVQSRLiteVCF
July 17, 2023 19:12 1h 7m 53s
Update logic around missing sample data in TDM [VS-997] Build and Test GATK 4 #2802: Pull request #8422 synchronize by rsasch
July 17, 2023 18:25 1h 10m 26s rsa_vs_997
rsa_vs_997
July 17, 2023 18:25 1h 10m 26s
Update logic around missing sample data in TDM [VS-997] Build and Test GATK 4 #2801: Pull request #8422 synchronize by rsasch
July 17, 2023 18:15 1h 9m 25s rsa_vs_997
rsa_vs_997
July 17, 2023 18:15 1h 9m 25s
Update logic around missing sample data in TDM [VS-997] Build and Test GATK 4 #2800: Pull request #8422 opened by rsasch
July 17, 2023 18:09 1h 12m 2s rsa_vs_997
rsa_vs_997
July 17, 2023 18:09 1h 12m 2s
Removed a line in FlowBasedAnnotation that contained a bug and thus was meaningless Build and Test GATK 4 #2798: Pull request #8421 synchronize by ilyasoifer
July 16, 2023 08:37 1h 24m 22s Ultimagen:ilyasoifer/fix.h-indel.definition.bug
Ultimagen:ilyasoifer/fix.h-indel.definition.bug
July 16, 2023 08:37 1h 24m 22s
Removed a line in FlowBasedAnnotation that contained a bug and thus was meaningless Build and Test GATK 4 #2797: Pull request #8421 opened by ilyasoifer
July 16, 2023 08:24 1h 25m 14s Ultimagen:ilyasoifer/fix.h-indel.definition.bug
Ultimagen:ilyasoifer/fix.h-indel.definition.bug
July 16, 2023 08:24 1h 25m 14s
Bulk ingest: single FOFN + Quickstart + Beta [VS-962] [VS-984] [VS-982] Build and Test GATK 4 #2796: Pull request #8404 synchronize by mcovarr
July 15, 2023 08:16 1h 19m 41s vs_962_there_can_be_only_one
vs_962_there_can_be_only_one
July 15, 2023 08:16 1h 19m 41s
Bulk ingest: single FOFN + Quickstart + Beta [VS-962] [VS-984] [VS-982] Build and Test GATK 4 #2795: Pull request #8404 synchronize by mcovarr
July 14, 2023 20:57 1h 14m 42s vs_962_there_can_be_only_one
vs_962_there_can_be_only_one
July 14, 2023 20:57 1h 14m 42s
testing nio upgrade Build and Test GATK 4 #2794: Pull request #8420 opened by lbergelson
July 14, 2023 20:45 1h 27m 23s lb_update_nio
lb_update_nio
July 14, 2023 20:45 1h 27m 23s
Bulk ingest: single FOFN + Quickstart + Beta [VS-962] [VS-984] [VS-982] Build and Test GATK 4 #2793: Pull request #8404 synchronize by mcovarr
July 14, 2023 20:35 1h 25m 22s vs_962_there_can_be_only_one
vs_962_there_can_be_only_one
July 14, 2023 20:35 1h 25m 22s
Fixed debug log severity for read threading messages. Build and Test GATK 4 #2792: Pull request #8419 opened by jonn-smith
July 14, 2023 20:35 1h 34m 39s jts_hc_read_threading_logging_fix
jts_hc_read_threading_logging_fix
July 14, 2023 20:35 1h 34m 39s
Bulk ingest: single FOFN + Quickstart + Beta [VS-962] [VS-984] [VS-982] Build and Test GATK 4 #2791: Pull request #8404 synchronize by mcovarr
July 14, 2023 20:32 1h 15m 26s vs_962_there_can_be_only_one
vs_962_there_can_be_only_one
July 14, 2023 20:32 1h 15m 26s
ReblockGVCFs cleanup (#8411) Build and Test GATK 4 #2790: Commit 248dd79 pushed by meganshand
July 14, 2023 20:23 1h 19m 22s master
master
July 14, 2023 20:23 1h 19m 22s
Made runtime attrs to args in MT pipeline (#8417) Build and Test GATK 4 #2789: Commit 8b7a3f6 pushed by meganshand
July 14, 2023 20:23 1h 30m 14s master
master
July 14, 2023 20:23 1h 30m 14s
Bulk ingest: single FOFN + Quickstart + Beta [VS-962] [VS-984] [VS-982] Build and Test GATK 4 #2788: Pull request #8404 synchronize by mcovarr
July 14, 2023 20:21 1h 10m 16s vs_962_there_can_be_only_one
vs_962_there_can_be_only_one
July 14, 2023 20:21 1h 10m 16s
Fixed bug in download metrics script. (#8418) Build and Test GATK 4 #2787: Commit 1529aa1 pushed by droazen
July 14, 2023 18:11 1h 26m 38s master
master
July 14, 2023 18:11 1h 26m 38s
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