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Add a --numeric-gt option to VariantsToTable Build and Test GATK 4 #4582: Pull request #8219 synchronize by lbergelson
August 16, 2024 17:56 1h 1m 12s lb_variantsToTable_gt_flag
lb_variantsToTable_gt_flag
August 16, 2024 17:56 1h 1m 12s
VS-1113 Update VQSR and VETS naming Build and Test GATK 4 #4581: Pull request #8948 synchronize by gbggrant
August 16, 2024 15:27 1h 1m 8s gg_VS-1113_VQSR_VETS_That_Is_All
gg_VS-1113_VQSR_VETS_That_Is_All
August 16, 2024 15:27 1h 1m 8s
various vulnerability fixes Build and Test GATK 4 #4580: Pull request #8950 synchronize by vilay-nference
August 16, 2024 10:58 14m 14s vilay-nference:Vulnerablilities-fixes
vilay-nference:Vulnerablilities-fixes
August 16, 2024 10:58 14m 14s
VS-1113 Update VQSR and VETS naming Build and Test GATK 4 #4579: Pull request #8948 synchronize by gbggrant
August 15, 2024 13:29 1h 1m 30s gg_VS-1113_VQSR_VETS_That_Is_All
gg_VS-1113_VQSR_VETS_That_Is_All
August 15, 2024 13:29 1h 1m 30s
VS-1113 Update VQSR and VETS naming Build and Test GATK 4 #4578: Pull request #8948 synchronize by gbggrant
August 15, 2024 13:19 23m 34s gg_VS-1113_VQSR_VETS_That_Is_All
gg_VS-1113_VQSR_VETS_That_Is_All
August 15, 2024 13:19 23m 34s
Slight AoU docs adjustment [VS-1366] Build and Test GATK 4 #4577: Pull request #8955 opened by mcovarr
August 14, 2024 21:02 1h 2m 31s vs_1366_updates_updates
vs_1366_updates_updates
August 14, 2024 21:02 1h 2m 31s
VS-1113 Update VQSR and VETS naming Build and Test GATK 4 #4576: Pull request #8948 synchronize by gbggrant
August 14, 2024 15:11 1h 1m 16s gg_VS-1113_VQSR_VETS_That_Is_All
gg_VS-1113_VQSR_VETS_That_Is_All
August 14, 2024 15:11 1h 1m 16s
Update Script to Handle Both Files and FOFN [VS-1441] Build and Test GATK 4 #4575: Pull request #8954 opened by rsasch
August 14, 2024 13:01 16m 53s rsa_vs_1441
rsa_vs_1441
August 14, 2024 13:01 16m 53s
VS-1113 Update VQSR and VETS naming Build and Test GATK 4 #4574: Pull request #8948 synchronize by gbggrant
August 14, 2024 11:03 1h 0m 47s gg_VS-1113_VQSR_VETS_That_Is_All
gg_VS-1113_VQSR_VETS_That_Is_All
August 14, 2024 11:03 1h 0m 47s
Added a check for whether files can be created and executed within the configured tmp-dir Build and Test GATK 4 #4571: Pull request #8951 synchronize by KevinCLydon
August 13, 2024 19:53 54m 51s kl_noexec_tmp_warning_8453
kl_noexec_tmp_warning_8453
August 13, 2024 19:53 54m 51s
Issue #7159 Create tool for producing genomic regions (as a BED file) Build and Test GATK 4 #4570: Pull request #8942 synchronize by sanashah007
August 13, 2024 18:44 54m 45s ss_issue7159_gtfToBed
ss_issue7159_gtfToBed
August 13, 2024 18:44 54m 45s
Issue #7159 Create tool for producing genomic regions (as a BED file) Build and Test GATK 4 #4569: Pull request #8942 synchronize by sanashah007
August 13, 2024 18:42 54m 27s ss_issue7159_gtfToBed
ss_issue7159_gtfToBed
August 13, 2024 18:42 54m 27s
Engine read caching. Build and Test GATK 4 #4568: Pull request #4902 synchronize by cmnbroad
August 13, 2024 18:26 54m 29s cn_cache_read_inputs
cn_cache_read_inputs
August 13, 2024 18:26 54m 29s
VS-1113 Update VQSR and VETS naming Build and Test GATK 4 #4567: Pull request #8948 synchronize by gbggrant
August 13, 2024 18:15 1h 1m 46s gg_VS-1113_VQSR_VETS_That_Is_All
gg_VS-1113_VQSR_VETS_That_Is_All
August 13, 2024 18:15 1h 1m 46s
Issue #7159 Create tool for producing genomic regions (as a BED file) Build and Test GATK 4 #4566: Pull request #8942 synchronize by sanashah007
August 13, 2024 17:41 15m 16s ss_issue7159_gtfToBed
ss_issue7159_gtfToBed
August 13, 2024 17:41 15m 16s
Added a check for whether files can be created and executed within the configured tmp-dir Build and Test GATK 4 #4565: Pull request #8951 opened by KevinCLydon
August 13, 2024 16:53 53m 54s kl_noexec_tmp_warning_8453
kl_noexec_tmp_warning_8453
August 13, 2024 16:53 53m 54s
Issue #7159 Create tool for producing genomic regions (as a BED file) Build and Test GATK 4 #4564: Pull request #8942 synchronize by sanashah007
August 13, 2024 14:59 55m 27s ss_issue7159_gtfToBed
ss_issue7159_gtfToBed
August 13, 2024 14:59 55m 27s
VS-1113 Update VQSR and VETS naming Build and Test GATK 4 #4563: Pull request #8948 synchronize by gbggrant
August 13, 2024 13:29 1h 1m 13s gg_VS-1113_VQSR_VETS_That_Is_All
gg_VS-1113_VQSR_VETS_That_Is_All
August 13, 2024 13:29 1h 1m 13s
Bundle support for FeatureInputs, references; add CreateBundle tool. Build and Test GATK 4 #4562: Pull request #8944 synchronize by cmnbroad
August 13, 2024 12:49 26s cn_vcf_bundles
cn_vcf_bundles
August 13, 2024 12:49 26s
Bundle support for FeatureInputs, references; add CreateBundle tool. Build and Test GATK 4 #4561: Pull request #8944 synchronize by cmnbroad
August 13, 2024 12:47 2m 10s cn_vcf_bundles
cn_vcf_bundles
August 13, 2024 12:47 2m 10s
Bundle support for FeatureInputs, references; add CreateBundle tool. Build and Test GATK 4 #4560: Pull request #8944 synchronize by cmnbroad
August 13, 2024 12:40 3m 54s cn_vcf_bundles
cn_vcf_bundles
August 13, 2024 12:40 3m 54s
VS-1113 Update VQSR and VETS naming Build and Test GATK 4 #4557: Pull request #8948 synchronize by gbggrant
August 12, 2024 17:53 1h 3m 43s gg_VS-1113_VQSR_VETS_That_Is_All
gg_VS-1113_VQSR_VETS_That_Is_All
August 12, 2024 17:53 1h 3m 43s
VS-1113 Update VQSR and VETS naming Build and Test GATK 4 #4556: Pull request #8948 synchronize by gbggrant
August 12, 2024 14:50 1h 1m 20s gg_VS-1113_VQSR_VETS_That_Is_All
gg_VS-1113_VQSR_VETS_That_Is_All
August 12, 2024 14:50 1h 1m 20s
Issue #7159 Create tool for producing genomic regions (as a BED file) Build and Test GATK 4 #4555: Pull request #8942 synchronize by sanashah007
August 9, 2024 16:31 54m 1s ss_issue7159_gtfToBed
ss_issue7159_gtfToBed
August 9, 2024 16:31 54m 1s
Issue #7159 Create tool for producing genomic regions (as a BED file) Build and Test GATK 4 #4554: Pull request #8942 synchronize by sanashah007
August 9, 2024 16:08 54m 26s ss_issue7159_gtfToBed
ss_issue7159_gtfToBed
August 9, 2024 16:08 54m 26s