Update Script to Handle Both Files and FOFN [VS-1441] #8954
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
test run of filter correction: https://app.terra.bio/#workspaces/gvs-dev/RSA%20-%20GVS%20Quickstart%20V2%20/job_history/f7de418a-05c7-4720-8dc9-a997b1cfd456
test run of PGEN extract: https://app.terra.bio/#workspaces/gvs-dev/RSA%20-%20GVS%20Quickstart%20V2%20/job_history/e2b2c875-4cfd-4cbe-879a-18fb91c1518e