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Build and Test GATK 4

Small addition to FeatureMap tool #2626

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Small addition to FeatureMap tool

Small addition to FeatureMap tool #2626

Run time

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Job Run time
build and push gatk docker to artifacts
28m 57s
build and push gatk docker to artifacts
28m 57s
Validate script WDLs using womtools
1m 49s
Validate script WDLs using womtools
1m 49s
check if the environment has privileges
1s
check if the environment has privileges
1s
Validate generated WDLs using womtools
16m 11s
Validate generated WDLs using womtools
16m 11s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell
16m 7s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell
22m 19s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell
18m 53s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell
18m 53s
WDL test RUN_CNV_SOMATIC_WDL on cromwell
16m 15s
WDL test RUN_CNV_SOMATIC_WDL on cromwell
16m 15s
WDL test RUN_M2_WDL on cromwell
22m 26s
WDL test RUN_M2_WDL on cromwell
22m 26s
WDL test RUN_CNN_WDL on cromwell
23m 41s
WDL test RUN_CNN_WDL on cromwell
23m 41s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell
19m 51s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell
19m 51s
Java 17.0.6+10 build and test cloud
6m 8s
Java 17.0.6+10 build and test cloud
6m 8s
Java 17.0.6+10 build and test integration
55m 13s
Java 17.0.6+10 build and test integration
55m 13s
Java 17.0.6+10 build and test unit
27m 18s
Java 17.0.6+10 build and test unit
27m 18s
Java 17.0.6+10 test on docker integration
58m 55s
Java 17.0.6+10 test on docker integration
58m 55s
Java 17.0.6+10 test on docker unit
39m 20s
Java 17.0.6+10 test on docker unit
39m 20s
Java 17.0.6+10 test on docker variantcalling
41m 50s
Java 17.0.6+10 test on docker variantcalling
41m 50s
Java 17.0.6+10 test on docker conda
37m 51s
Java 17.0.6+10 test on docker conda
37m 51s
14h 27m 44s