Build and Test GATK 4

Small addition to FeatureMap tool #2626

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Re-run triggered June 27, 2023 14:46

meganshand

#8347

Ultimagen:ultima.feature-map.develop

Status Success

Total duration 22m 36s

Artifacts 7

This run and associated checks have been archived and are scheduled for deletion. Learn more about checks retention

gatk-tests.yml

on: pull_request

check if the environment has privileges

build and push gatk docker to artifacts

Validate script WDLs using womtools

Validate generated WDLs using womtools

Matrix: wdlTests

Matrix: test

Matrix: testOnDocker

Annotations

6 errors and 4 warnings

WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell

Process completed with exit code 1.

WDL test RUN_M2_WDL on cromwell

Process completed with exit code 1.

WDL test RUN_CNV_SOMATIC_WDL on cromwell

Process completed with exit code 1.

WDL test RUN_CNN_WDL on cromwell

Process completed with exit code 1.

WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell

Process completed with exit code 1.

WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell

Process completed with exit code 1.

WDL test RUN_M2_WDL on cromwell

You are running out of disk space. The runner will stop working when the machine runs out of disk space. Free space left: 26 MB

WDL test RUN_CNN_WDL on cromwell

You are running out of disk space. The runner will stop working when the machine runs out of disk space. Free space left: 86 MB

Java 17.0.6+10 build and test cloud

No files were found with the provided path: build/reports/tests. No artifacts will be uploaded.

WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell

You are running out of disk space. The runner will stop working when the machine runs out of disk space. Free space left: 56 MB

Artifacts

Produced during runtime

Name	Size
gatkDockerImage Expired	2.07 GB
test-results-17.0.6+10-integration Expired	3.48 MB
test-results-17.0.6+10-unit Expired	155 MB
test-results-docker-17.0.6+10-conda Expired	288 KB
test-results-docker-17.0.6+10-integration Expired	3.39 MB
test-results-docker-17.0.6+10-unit Expired	153 MB
test-results-docker-17.0.6+10-variantcalling Expired	232 KB