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Add sensory corpuscle #3295

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merged 11 commits into from
Sep 3, 2024
Merged

Add sensory corpuscle #3295

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e29800c
Add sensory corpuscle
lubianat Jun 12, 2024
db50cb7
Change date relation to dcterms-date
lubianat Jun 12, 2024
575cbb4
Change synonym type and remove superclass
lubianat Jun 12, 2024
439cf54
Merge branch 'master' into issue-3290
aleixpuigb Jun 25, 2024
3947dfe
define idspace for NIF_Subcellular
anitacaron Jun 25, 2024
bf9f4ae
declare idspace `NIFEXT` that is not OBO URI
anitacaron Jul 2, 2024
225bbc6
Merge branch 'master' into issue-3290
anitacaron Aug 14, 2024
81dcf6c
use `terms:contributor` instead of `created_by`
anitacaron Aug 14, 2024
9c9d960
Merge branch 'master' into issue-3290
anitacaron Aug 14, 2024
de943a0
Merge branch 'master' into issue-3290
Sep 2, 2024
4a3dee3
Merge branch 'master' into issue-3290
aleixpuigb Sep 3, 2024
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25 changes: 19 additions & 6 deletions src/ontology/uberon-edit.obo
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Original file line number Diff line number Diff line change
Expand Up @@ -45,7 +45,9 @@ synonymtypedef: PENDING_REVIEW "expert consultation and attribution required"
synonymtypedef: SENSU "taxonomic disambiguation"
synonymtypedef: SYSTEMATIC "a systematic synonym used as the base name for design patterns"
default-namespace: uberon
idspace: EFO http://www.ebi.ac.uk/efo/EFO_
idspace: EFO http://www.ebi.ac.uk/efo/EFO_
idspace: NIF_Subcellular http://www.neurolex.org/wiki/
idspace: NIFEXT http://uri.neuinfo.org/nif/nifstd/nifext_
treat-xrefs-as-equivalent: AEO
treat-xrefs-as-equivalent: BILA
treat-xrefs-as-equivalent: BSPO
Expand Down Expand Up @@ -76938,7 +76940,7 @@ xref: NIF_Subcellular:FMA_83604
xref: SCTID:37419002
xref: Wikipedia:File\:Gray935.png
xref: Wikipedia:Lamellar_corpuscle
is_a: UBERON:0012449 {source="Wikipedia"} ! mechanoreceptor
is_a: UBERON:8900000 {source="Wikipedia"} ! sensory corpuscle
relationship: part_of UBERON:0002067 {notes="may also be located in organs - check"} ! dermis
property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/52/Gray935.png" xsd:anyURI
property_value: external_ontology_notes "FMA treats pacinia and G-M as distinct" xsd:string {external_ontology="FMA"}
Expand Down Expand Up @@ -152845,7 +152847,7 @@ def: "The Corpuscles of Herbst or Herbst corpuscles are a nerve-ending similar t
synonym: "corpuscles of Herbst" RELATED [Wikipedia:Corpuscles_of_Herbst]
synonym: "Herbst corpuscle" RELATED [Wikipedia:Corpuscles_of_Herbst]
xref: Wikipedia:Corpuscles_of_Herbst
is_a: UBERON:0012449 {source="Wikipedia"} ! mechanoreceptor
is_a: UBERON:8900000 {source="Wikipedia"} ! sensory corpuscle
relationship: in_taxon NCBITaxon:8782 ! Aves

[Term]
Expand Down Expand Up @@ -152880,7 +152882,7 @@ xref: NCIT:C13171
xref: SCTID:41421000
xref: UMLS:C0205831 {source="ncithesaurus:Meissner_Corpuscle"}
xref: Wikipedia:Meissner%27s_corpuscle
is_a: UBERON:0012449 {source="Wikipedia"} ! mechanoreceptor
is_a: UBERON:8900000 {source="Wikipedia"} ! sensory corpuscle
relationship: part_of UBERON:0002199 ! integument

[Term]
Expand Down Expand Up @@ -152948,7 +152950,7 @@ xref: NCIT:C13175
xref: SCTID:53140000
xref: UMLS:C0035943 {source="ncithesaurus:Ruffinis_Corpuscle"}
xref: Wikipedia:Bulbous_corpuscle
is_a: UBERON:0012449 {source="FMA"} ! mechanoreceptor
is_a: UBERON:8900000 {source="FMA"} ! sensory corpuscle
relationship: part_of UBERON:0002199 ! integument
property_value: curator_notes "there is some debate as to its existence[ISBN:9780849388118]" xsd:string
property_value: external_ontology_notes "MP says subcutaneous tissue of digits; NCITA says hypodermis" xsd:string {external_ontology="MP"}
Expand Down Expand Up @@ -177339,7 +177341,7 @@ alt_id: UBERON:0025487
synonym: "regional part of gustatory epithelium" EXACT HUMAN_PREFERRED [BIRNLEX:4100]
is_obsolete: true
consider: BIRNLEX:4100
consider: nifext:13
consider: NIFEXT:13

[Term]
id: UBERON:0025236
Expand Down Expand Up @@ -224687,6 +224689,17 @@ intersection_of: luminal_space_of UBERON:0002299 ! alveolus of lung
relationship: dc-contributor https://orcid.org/0009-0000-8480-9277
property_value: dcterms-date "2024-06-28T10:50:18Z" xsd:dateTime

[Term]
id: UBERON:8900000
name: sensory corpuscle
def: "A mechanosensory complex in the terminal end of some nerves that forms a corpuscle. It consists of one or more neuronal terminations and associated non-neuronal cells." [PMID:35356056]
synonym: "COEC" RELATED OMO:0003000 [PMID:35356056]
synonym: "cutaneous end-organ complex" EXACT [PMID:35356056]
xref: http://www.wikidata.org/entity/Q126363978
is_a: UBERON:0012449 ! mechanoreceptor
relationship: dc-contributor https://orcid.org/0000-0003-2473-2313
property_value: dcterms-date "2024-06-12T13:51:05Z" xsd:string

[Typedef]
id: aboral_to
name: aboral to
Expand Down
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