Merge pull request #22 from obophenotype/v2023-11-17

Add v2023-11-17 release artefacts
obophenotype · Nov 17, 2023 · b360a07 · b360a07
2 parents 2062641 + 3688811
commit b360a07
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Showing 2 changed files with 48 additions and 4 deletions.
diff --git a/chebi_slim.obo b/chebi_slim.obo
@@ -1,13 +1,13 @@
 format-version: 1.2
-data-version: chebi/obophenotype/releases/2023-10-25/chebi_slim.owl
+data-version: chebi/obophenotype/releases/2023-11-17/chebi_slim.owl
 subsetdef: 1_STAR ""
 subsetdef: 2_STAR ""
 subsetdef: 3_STAR ""
 synonymtypedef: BRAND_NAME ""
 synonymtypedef: INN ""
 synonymtypedef: IUPAC_NAME ""
 ontology: chebi/obophenotype/chebi_slim
-property_value: owl:versionInfo "2023-10-25" xsd:string
+property_value: owl:versionInfo "2023-11-17" xsd:string
 
 [Term]
 id: CHEBI:100147
@@ -139990,6 +139990,27 @@ synonym: "phenoxy herbicides" RELATED [ChEBI]
 xref: Wikipedia:Phenoxy_herbicide
 is_a: CHEBI:24527 ! herbicide
 
+[Term]
+id: CHEBI:60579
+name: calcium oxalate
+namespace: chebi_ontology
+def: "The calcium salt of oxalic acid, which in excess in the urine may lead to formation of oxalate calculi (kidney stones)." []
+subset: 3_STAR
+synonym: "calcium oxalate" EXACT IUPAC_NAME [IUPAC]
+xref: CAS:563-72-4 {source="KEGG COMPOUND"}
+xref: CAS:563-72-4 {source="ChemIDplus"}
+xref: KEGG:C17478
+xref: Reaxys:3915709 {source="Reaxys"}
+is_a: CHEBI:51031 ! organic calcium salt
+relationship: has_part CHEBI:30623 ! oxalate(2-)
+property_value: http://purl.obolibrary.org/obo/chebi/charge "0" xsd:string
+property_value: http://purl.obolibrary.org/obo/chebi/formula "C2CaO4" xsd:string
+property_value: http://purl.obolibrary.org/obo/chebi/inchi "InChI=1S/C2H2O4.Ca/c3-1(4)2(5)6;/h(H,3,4)(H,5,6);/q;+2/p-2" xsd:string
+property_value: http://purl.obolibrary.org/obo/chebi/inchikey "QXDMQSPYEZFLGF-UHFFFAOYSA-L" xsd:string
+property_value: http://purl.obolibrary.org/obo/chebi/mass "128.09700" xsd:string
+property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "127.94225" xsd:string
+property_value: http://purl.obolibrary.org/obo/chebi/smiles "[Ca++].[O-]C(=O)C([O-])=O" xsd:string
+
 [Term]
 id: CHEBI:60598
 name: opioid agent

diff --git a/chebi_slim.owl b/chebi_slim.owl
@@ -7,8 +7,8 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)
 
 
 Ontology(<http://purl.obolibrary.org/obo/chebi/obophenotype/chebi_slim.owl>
-<http://purl.obolibrary.org/obo/chebi/obophenotype/releases/2023-10-25/chebi_slim.owl>
-Annotation(owl:versionInfo "2023-10-25")
+<http://purl.obolibrary.org/obo/chebi/obophenotype/releases/2023-11-17/chebi_slim.owl>
+Annotation(owl:versionInfo "2023-11-17")
 
 Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_100147>))
 Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_10022>))
@@ -6047,6 +6047,7 @@ Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_60525>))
 Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_60531>))
 Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_6054>))
 Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_60575>))
+Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_60579>))
 Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_60598>))
 Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_60599>))
 Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_60600>))
@@ -154159,6 +154160,28 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <htt
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/CHEBI_60575> "phenoxy herbicide")
 SubClassOf(<http://purl.obolibrary.org/obo/CHEBI_60575> <http://purl.obolibrary.org/obo/CHEBI_24527>)
 
+# Class: <http://purl.obolibrary.org/obo/CHEBI_60579> (calcium oxalate)
+
+AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/CHEBI_60579> "The calcium salt of oxalic acid, which in excess in the urine may lead to formation of oxalate calculi (kidney stones).")
+AnnotationAssertion(<http://purl.obolibrary.org/obo/chebi/charge> <http://purl.obolibrary.org/obo/CHEBI_60579> "0")
+AnnotationAssertion(<http://purl.obolibrary.org/obo/chebi/formula> <http://purl.obolibrary.org/obo/CHEBI_60579> "C2CaO4")
+AnnotationAssertion(<http://purl.obolibrary.org/obo/chebi/inchi> <http://purl.obolibrary.org/obo/CHEBI_60579> "InChI=1S/C2H2O4.Ca/c3-1(4)2(5)6;/h(H,3,4)(H,5,6);/q;+2/p-2")
+AnnotationAssertion(<http://purl.obolibrary.org/obo/chebi/inchikey> <http://purl.obolibrary.org/obo/CHEBI_60579> "QXDMQSPYEZFLGF-UHFFFAOYSA-L")
+AnnotationAssertion(<http://purl.obolibrary.org/obo/chebi/mass> <http://purl.obolibrary.org/obo/CHEBI_60579> "128.09700")
+AnnotationAssertion(<http://purl.obolibrary.org/obo/chebi/monoisotopicmass> <http://purl.obolibrary.org/obo/CHEBI_60579> "127.94225")
+AnnotationAssertion(<http://purl.obolibrary.org/obo/chebi/smiles> <http://purl.obolibrary.org/obo/CHEBI_60579> "[Ca++].[O-]C(=O)C([O-])=O")
+AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#source> "ChemIDplus") <http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/CHEBI_60579> "CAS:563-72-4")
+AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#source> "KEGG COMPOUND") <http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/CHEBI_60579> "CAS:563-72-4")
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/CHEBI_60579> "KEGG:C17478")
+AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#source> "Reaxys") <http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/CHEBI_60579> "Reaxys:3915709")
+AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "IUPAC") Annotation(<http://www.geneontology.org/formats/oboInOwl#hasSynonymType> <http://purl.obolibrary.org/obo/chebi#IUPAC_NAME>) <http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/CHEBI_60579> "calcium oxalate")
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/CHEBI_60579> "chebi_ontology")
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/CHEBI_60579> "CHEBI:60579")
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/CHEBI_60579> <http://purl.obolibrary.org/obo/chebi#3_STAR>)
+AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/CHEBI_60579> "calcium oxalate")
+SubClassOf(<http://purl.obolibrary.org/obo/CHEBI_60579> <http://purl.obolibrary.org/obo/CHEBI_51031>)
+SubClassOf(<http://purl.obolibrary.org/obo/CHEBI_60579> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_30623>))
+
 # Class: <http://purl.obolibrary.org/obo/CHEBI_60598> (opioid agent)
 
 AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/CHEBI_60598> "Any agent that acts on an opioid receptor or affects the life cycle of an opioid  transmitter.")