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create new msa_alignment subworkflow #33

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create new msa_alignment subworkflow

create new msa_alignment subworkflow #33

Run time

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Job Run time
pre-commit
16s
prettier
14s
nf-test-changes
22s
editorconfig
4s
nf-core-lint-modules (msa_alignment)
39s
nf-core-lint-modules (tcoffee/structurealign)
44s
nf-core-lint-modules (tcoffee/seqreformat)
44s
nf-test (modules/nf-class/tcoffee/structurealign, conda)
2m 47s
nf-core-lint-modules (clustalo/align)
43s
nf-test (modules/nf-class/tcoffee/structurealign, docker)
1m 43s
nf-core-lint-modules (muscle5/super5)
49s
nf-core-lint-modules (learnmsa/align)
1m 0s
nf-test (modules/nf-class/tcoffee/structurealign, singularity)
3m 23s
nf-core-lint-modules (tcoffee/tcs)
39s
nf-test (modules/nf-class/tcoffee/seqreformat, conda)
2m 39s
nf-core-lint-modules (kalign/align)
43s
nf-core-lint-modules (tcoffee/alncompare)
38s
nf-test (modules/nf-class/tcoffee/seqreformat, docker)
2m 4s
nf-core-lint-modules (magus/align)
48s
nf-test (modules/nf-class/tcoffee/seqreformat, singularity)
4m 8s
nf-test (modules/nf-class/clustalo/align, conda)
1m 57s
nf-core-lint-modules (tcoffee/irmsd)
44s
nf-test (modules/nf-class/clustalo/align, docker)
1m 24s
nf-core-lint-modules (tcoffee/align)
44s
nf-test (modules/nf-class/clustalo/align, singularity)
3m 11s
nf-core-lint-modules (clustalo/guidetree)
44s
nf-test (subworkflows/nf-class/msa_alignment, conda)
6m 55s
nf-core-lint-modules (famsa/guidetree)
41s
nf-test (subworkflows/nf-class/msa_alignment, docker)
14m 27s
nf-core-lint-modules (famsa/treealign)
54s
nf-test (subworkflows/nf-class/msa_alignment, singularity)
5m 40s
nf-core-lint-modules (tcoffee/libalign)
45s
nf-test (modules/nf-class/muscle5/super5, conda)
1m 43s
nf-core-lint-modules (mafft)
39s
nf-test (modules/nf-class/muscle5/super5, docker)
1m 30s
nf-core-lint-modules (untar)
42s
nf-test (modules/nf-class/muscle5/super5, singularity)
3m 3s
nf-core-lint-modules (mtmalign/align)
38s
nf-core-lint-modules (tcoffee/treealign)
45s
nf-test (modules/nf-class/learnmsa/align, docker)
3m 39s
nf-core-lint-modules (famsa/align)
37s
nf-test (modules/nf-class/learnmsa/align, singularity)
5m 43s
nf-core-lint-modules (clustalo/treealign)
38s
nf-test (modules/nf-class/tcoffee/tcs, conda)
4m 58s
nf-core-lint-modules (pigz/compress)
45s
nf-test (modules/nf-class/tcoffee/tcs, docker)
1m 58s
nf-core-lint-modules (magus/guidetree)
51s
nf-test (modules/nf-class/tcoffee/tcs, singularity)
8m 41s
nf-core-lint-modules (magus/treealign)
54s
nf-test (modules/nf-class/kalign/align, conda)
1m 17s
nf-test (modules/nf-class/kalign/align, docker)
1m 16s
nf-test (modules/nf-class/kalign/align, singularity)
2m 59s
nf-test (modules/nf-class/tcoffee/alncompare, conda)
2m 45s
nf-test (modules/nf-class/tcoffee/alncompare, docker)
1m 57s
nf-test (modules/nf-class/tcoffee/alncompare, singularity)
8m 47s
nf-test (modules/nf-class/magus/align, conda)
2m 13s
nf-test (modules/nf-class/magus/align, docker)
1m 28s
nf-test (modules/nf-class/magus/align, singularity)
5m 2s
nf-test (modules/nf-class/tcoffee/irmsd, conda)
3m 59s
nf-test (modules/nf-class/tcoffee/irmsd, docker)
2m 4s
nf-test (modules/nf-class/tcoffee/irmsd, singularity)
5m 44s
nf-test (modules/nf-class/tcoffee/align, conda)
2m 43s
nf-test (modules/nf-class/tcoffee/align, docker)
2m 9s
nf-test (modules/nf-class/tcoffee/align, singularity)
8m 44s
nf-test (modules/nf-class/clustalo/guidetree, conda)
1m 41s
nf-test (modules/nf-class/clustalo/guidetree, docker)
1m 30s
nf-test (modules/nf-class/clustalo/guidetree, singularity)
3m 19s
nf-test (modules/nf-class/famsa/guidetree, conda)
1m 20s
nf-test (modules/nf-class/famsa/guidetree, docker)
1m 8s
nf-test (modules/nf-class/famsa/guidetree, singularity)
3m 16s
nf-test (modules/nf-class/famsa/treealign, conda)
1m 46s
nf-test (modules/nf-class/famsa/treealign, docker)
1m 15s
nf-test (modules/nf-class/famsa/treealign, singularity)
3m 8s
nf-test (modules/nf-class/tcoffee/libalign, conda)
2m 43s
nf-test (modules/nf-class/tcoffee/libalign, docker)
1m 50s
nf-test (modules/nf-class/tcoffee/libalign, singularity)
4m 53s
nf-test (modules/nf-class/mafft, conda)
1m 33s
nf-test (modules/nf-class/mafft, docker)
1m 20s
nf-test (modules/nf-class/mafft, singularity)
3m 17s
nf-test (modules/nf-class/untar, conda)
1m 38s
nf-test (modules/nf-class/untar, docker)
1m 28s
nf-test (modules/nf-class/untar, singularity)
2m 59s
nf-test (modules/nf-class/mtmalign/align, conda)
1m 44s
nf-test (modules/nf-class/mtmalign/align, docker)
1m 53s
nf-test (modules/nf-class/mtmalign/align, singularity)
3m 8s
nf-test (modules/nf-class/tcoffee/treealign, conda)
2m 43s
nf-test (modules/nf-class/tcoffee/treealign, docker)
2m 4s
nf-test (modules/nf-class/tcoffee/treealign, singularity)
3m 30s
nf-test (modules/nf-class/famsa/align, conda)
1m 32s
nf-test (modules/nf-class/famsa/align, docker)
1m 17s
nf-test (modules/nf-class/famsa/align, singularity)
3m 1s
nf-test (modules/nf-class/clustalo/treealign, conda)
1m 58s
nf-test (modules/nf-class/clustalo/treealign, docker)
1m 48s
nf-test (modules/nf-class/clustalo/treealign, singularity)
3m 21s
nf-test (modules/nf-class/pigz/compress, conda)
1m 41s
nf-test (modules/nf-class/pigz/compress, docker)
1m 21s
nf-test (modules/nf-class/pigz/compress, singularity)
3m 28s
nf-test (modules/nf-class/magus/guidetree, conda)
1m 57s
nf-test (modules/nf-class/magus/guidetree, docker)
1m 23s
nf-test (modules/nf-class/magus/guidetree, singularity)
14m 12s
nf-test (modules/nf-class/magus/treealign, conda)
2m 18s
nf-test (modules/nf-class/magus/treealign, docker)
1m 47s
nf-test (modules/nf-class/magus/treealign, singularity)
3m 39s
confirm-pass
12s
4h 14m 5s