Run tests

create new msa_alignment subworkflow #33

Triggered via pull request July 12, 2024 09:44

mirpedrol

synchronize #6

msa-alignment-subworkflow

Status Failure

Total duration 25m 22s

Artifacts –

test.yml

on: pull_request

Matrix: nf-core-lint-modules

Matrix: nf-test

confirm-pass

12s

Annotations

9 errors and 51 warnings

nf-core-lint-modules (msa_alignment)

Process completed with exit code 1.

nf-core-lint-modules (pigz/compress)

Process completed with exit code 1.

nf-core-lint-modules (untar)

Process completed with exit code 1.

nf-test (subworkflows/nf-class/msa_alignment, singularity)

The runner has received a shutdown signal. This can happen when the runner service is stopped, or a manually started runner is canceled.

nf-test (subworkflows/nf-class/msa_alignment, singularity)

The operation was canceled.

nf-test (subworkflows/nf-class/msa_alignment, conda)

The runner has received a shutdown signal. This can happen when the runner service is stopped, or a manually started runner is canceled.

nf-test (subworkflows/nf-class/msa_alignment, conda)

The operation was canceled.

nf-test (subworkflows/nf-class/msa_alignment, docker)

Process completed with exit code 1.

confirm-pass

Process completed with exit code 1.

pre-commit

The `python-version` input is not set. The version of Python currently in `PATH` will be used.

nf-test (modules/nf-class/clustalo/align, singularity)

The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

nf-test (modules/nf-class/clustalo/align, singularity)

The following actions uses Node.js version which is deprecated and will be forced to run on node20: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

nf-test (modules/nf-class/famsa/align, singularity)

nf-test (modules/nf-class/clustalo/guidetree, singularity)

nf-test (modules/nf-class/famsa/guidetree, singularity)

nf-test (modules/nf-class/famsa/treealign, singularity)

nf-test (modules/nf-class/clustalo/treealign, singularity)

nf-test (modules/nf-class/kalign/align, singularity)

nf-test (modules/nf-class/mafft, singularity)

nf-test (modules/nf-class/magus/treealign, singularity)

nf-test (modules/nf-class/mtmalign/align, singularity)

nf-test (modules/nf-class/muscle5/super5, singularity)

nf-test (modules/nf-class/pigz/compress, singularity)

nf-test (modules/nf-class/learnmsa/align, singularity)

nf-test (modules/nf-class/magus/align, singularity)

nf-test (modules/nf-class/tcoffee/treealign, singularity)

nf-test (modules/nf-class/tcoffee/structurealign, singularity)

nf-test (modules/nf-class/tcoffee/libalign, singularity)

nf-test (modules/nf-class/tcoffee/irmsd, singularity)

nf-test (modules/nf-class/untar, singularity)

nf-test (modules/nf-class/tcoffee/seqreformat, singularity)

nf-test (modules/nf-class/tcoffee/alncompare, singularity)

nf-test (modules/nf-class/tcoffee/align, singularity)

nf-test (subworkflows/nf-class/msa_alignment, singularity)

nf-test (modules/nf-class/tcoffee/tcs, singularity)

nf-test (modules/nf-class/magus/guidetree, singularity)

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create new msa_alignment subworkflow #33

Summary