Merge pull request #1172 from milaboratory/bd-presets-updated

Bd presets updated
milaboratory · Jul 4, 2023 · d5753f1 · d5753f1
2 parents 565aa5e + 0c34235
commit d5753f1
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diff --git a/build.gradle.kts b/build.gradle.kts
@@ -132,6 +132,7 @@ val toObfuscate: Configuration by configurations.creating {
 
 val obfuscationLibs: Configuration by configurations.creating
 
+
 val mixcrAlgoVersion = "4.3.0-228-tiny-things-2"
 val milibVersion = "3.0.0-1-master"
 val mitoolVersion = ""

diff --git a/changelogs/v4.4.md b/changelogs/v4.4.md
@@ -313,4 +313,11 @@ mixcr analyze generic-sc-ht-vdj-amplicon --species hsa \
 
 - New preset for FLAIRR-seq `flairr-seq-bcr`
 
+- `bd-rhapsody-mouse-tcr-full-length`, `bd-rhapsody-mouse-bcr-full-length`, `bd-rhapsody-human-tcr-full-length` and `bd-rhapsody-human-bcr-full-length` are deprecated and replaced by `bd-sc-xcr-rhapsody-full-length`.
+
+- `bd-rhapsody-human-tcr-v1`, `bd-rhapsody-human-bcr-v1`,`bd-rhapsody-human-tcr-v2`,`bd-rhapsody-human-bcr-v2` are now deprecated and replaced by `bd-human-sc-xcr-rhapsody-cdr3`
+
+- `bd-rhapsody-mouse-tcr-v1`, `bd-rhapsody-mouse-bcr-v1`,`bd-rhapsody-mouse-tcr-v2`,`bd-rhapsody-mouse-bcr-v2` are now deprecated and replaced by `bd-mouse-sc-xcr-rhapsody-cdr3`
+
+- All BD rhapsody presets now report CELLID number according to BD Rhapsoody gene expression software.