Merge pull request #1232 from milaboratory/mixcr-regression-tests/bd-…

…presets-updated Regression tests changes in the bd-presets-updated
milaboratory · Jul 4, 2023 · 0c34235 · 0c34235
2 parents 8de130c + 2d325c8
commit 0c34235
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diff --git a/regression/presets/analyze/bd-human-sc-xcr-rhapsody-cdr3.yaml b/regression/presets/analyze/bd-human-sc-xcr-rhapsody-cdr3.yaml
@@ -834,10 +834,6 @@ refineTagsAndSort:
             - type: group_operator_advanced_thresholding
               algo:
                 type: otsu
-              histTransformers:
-              - type: inflate
-                fraction: 0.15
-                value: 1.0
               logX: true
               minimalSample: 20
               fallbackThreshold: 1.0
@@ -872,10 +868,6 @@ refineTagsAndSort:
             - type: group_operator_advanced_thresholding
               algo:
                 type: otsu
-              histTransformers:
-              - type: inflate
-                fraction: 0.15
-                value: 1.0
               logX: true
               minimalSample: 20
               fallbackThreshold: 1.0

diff --git a/regression/presets/analyze/bd-mouse-sc-xcr-rhapsody-cdr3.yaml b/regression/presets/analyze/bd-mouse-sc-xcr-rhapsody-cdr3.yaml
@@ -839,10 +839,6 @@ refineTagsAndSort:
             - type: group_operator_advanced_thresholding
               algo:
                 type: otsu
-              histTransformers:
-              - type: inflate
-                fraction: 0.15
-                value: 1.0
               logX: true
               minimalSample: 20
               fallbackThreshold: 1.0
@@ -877,10 +873,6 @@ refineTagsAndSort:
             - type: group_operator_advanced_thresholding
               algo:
                 type: otsu
-              histTransformers:
-              - type: inflate
-                fraction: 0.15
-                value: 1.0
               logX: true
               minimalSample: 20
               fallbackThreshold: 1.0

diff --git a/regression/presets/analyze/bd-rhapsody-human-bcr-full-length.yaml b/regression/presets/analyze/bd-rhapsody-human-bcr-full-length.yaml
@@ -822,10 +822,6 @@ refineTagsAndSort:
             - type: group_operator_advanced_thresholding
               algo:
                 type: otsu
-              histTransformers:
-              - type: inflate
-                fraction: 0.15
-                value: 1.0
               logX: true
               minimalSample: 20
               fallbackThreshold: 1.0
@@ -860,10 +856,6 @@ refineTagsAndSort:
             - type: group_operator_advanced_thresholding
               algo:
                 type: otsu
-              histTransformers:
-              - type: inflate
-                fraction: 0.15
-                value: 1.0
               logX: true
               minimalSample: 20
               fallbackThreshold: 1.0

diff --git a/regression/presets/analyze/bd-rhapsody-human-bcr-v1.yaml b/regression/presets/analyze/bd-rhapsody-human-bcr-v1.yaml
@@ -834,10 +834,6 @@ refineTagsAndSort:
             - type: group_operator_advanced_thresholding
               algo:
                 type: otsu
-              histTransformers:
-              - type: inflate
-                fraction: 0.15
-                value: 1.0
               logX: true
               minimalSample: 20
               fallbackThreshold: 1.0
@@ -872,10 +868,6 @@ refineTagsAndSort:
             - type: group_operator_advanced_thresholding
               algo:
                 type: otsu
-              histTransformers:
-              - type: inflate
-                fraction: 0.15
-                value: 1.0
               logX: true
               minimalSample: 20
               fallbackThreshold: 1.0

diff --git a/regression/presets/analyze/bd-rhapsody-human-bcr-v2.yaml b/regression/presets/analyze/bd-rhapsody-human-bcr-v2.yaml
@@ -834,10 +834,6 @@ refineTagsAndSort:
             - type: group_operator_advanced_thresholding
               algo:
                 type: otsu
-              histTransformers:
-              - type: inflate
-                fraction: 0.15
-                value: 1.0
               logX: true
               minimalSample: 20
               fallbackThreshold: 1.0
@@ -872,10 +868,6 @@ refineTagsAndSort:
             - type: group_operator_advanced_thresholding
               algo:
                 type: otsu
-              histTransformers:
-              - type: inflate
-                fraction: 0.15
-                value: 1.0
               logX: true
               minimalSample: 20
               fallbackThreshold: 1.0

diff --git a/regression/presets/analyze/bd-rhapsody-human-tcr-full-length.yaml b/regression/presets/analyze/bd-rhapsody-human-tcr-full-length.yaml
@@ -822,10 +822,6 @@ refineTagsAndSort:
             - type: group_operator_advanced_thresholding
               algo:
                 type: otsu
-              histTransformers:
-              - type: inflate
-                fraction: 0.15
-                value: 1.0
               logX: true
               minimalSample: 20
               fallbackThreshold: 1.0
@@ -860,10 +856,6 @@ refineTagsAndSort:
             - type: group_operator_advanced_thresholding
               algo:
                 type: otsu
-              histTransformers:
-              - type: inflate
-                fraction: 0.15
-                value: 1.0
               logX: true
               minimalSample: 20
               fallbackThreshold: 1.0

diff --git a/regression/presets/analyze/bd-rhapsody-human-tcr-v1.yaml b/regression/presets/analyze/bd-rhapsody-human-tcr-v1.yaml
@@ -834,10 +834,6 @@ refineTagsAndSort:
             - type: group_operator_advanced_thresholding
               algo:
                 type: otsu
-              histTransformers:
-              - type: inflate
-                fraction: 0.15
-                value: 1.0
               logX: true
               minimalSample: 20
               fallbackThreshold: 1.0
@@ -872,10 +868,6 @@ refineTagsAndSort:
             - type: group_operator_advanced_thresholding
               algo:
                 type: otsu
-              histTransformers:
-              - type: inflate
-                fraction: 0.15
-                value: 1.0
               logX: true
               minimalSample: 20
               fallbackThreshold: 1.0

diff --git a/regression/presets/analyze/bd-rhapsody-human-tcr-v2.yaml b/regression/presets/analyze/bd-rhapsody-human-tcr-v2.yaml
@@ -834,10 +834,6 @@ refineTagsAndSort:
             - type: group_operator_advanced_thresholding
               algo:
                 type: otsu
-              histTransformers:
-              - type: inflate
-                fraction: 0.15
-                value: 1.0
               logX: true
               minimalSample: 20
               fallbackThreshold: 1.0
@@ -872,10 +868,6 @@ refineTagsAndSort:
             - type: group_operator_advanced_thresholding
               algo:
                 type: otsu
-              histTransformers:
-              - type: inflate
-                fraction: 0.15
-                value: 1.0
               logX: true
               minimalSample: 20
               fallbackThreshold: 1.0

diff --git a/regression/presets/analyze/bd-rhapsody-mouse-bcr-full-length.yaml b/regression/presets/analyze/bd-rhapsody-mouse-bcr-full-length.yaml
@@ -822,10 +822,6 @@ refineTagsAndSort:
             - type: group_operator_advanced_thresholding
               algo:
                 type: otsu
-              histTransformers:
-              - type: inflate
-                fraction: 0.15
-                value: 1.0
               logX: true
               minimalSample: 20
               fallbackThreshold: 1.0
@@ -860,10 +856,6 @@ refineTagsAndSort:
             - type: group_operator_advanced_thresholding
               algo:
                 type: otsu
-              histTransformers:
-              - type: inflate
-                fraction: 0.15
-                value: 1.0
               logX: true
               minimalSample: 20
               fallbackThreshold: 1.0

diff --git a/regression/presets/analyze/bd-rhapsody-mouse-bcr-v1.yaml b/regression/presets/analyze/bd-rhapsody-mouse-bcr-v1.yaml
@@ -839,10 +839,6 @@ refineTagsAndSort:
             - type: group_operator_advanced_thresholding
               algo:
                 type: otsu
-              histTransformers:
-              - type: inflate
-                fraction: 0.15
-                value: 1.0
               logX: true
               minimalSample: 20
               fallbackThreshold: 1.0
@@ -877,10 +873,6 @@ refineTagsAndSort:
             - type: group_operator_advanced_thresholding
               algo:
                 type: otsu
-              histTransformers:
-              - type: inflate
-                fraction: 0.15
-                value: 1.0
               logX: true
               minimalSample: 20
               fallbackThreshold: 1.0

diff --git a/regression/presets/analyze/bd-rhapsody-mouse-bcr-v2.yaml b/regression/presets/analyze/bd-rhapsody-mouse-bcr-v2.yaml
@@ -839,10 +839,6 @@ refineTagsAndSort:
             - type: group_operator_advanced_thresholding
               algo:
                 type: otsu
-              histTransformers:
-              - type: inflate
-                fraction: 0.15
-                value: 1.0
               logX: true
               minimalSample: 20
               fallbackThreshold: 1.0
@@ -877,10 +873,6 @@ refineTagsAndSort:
             - type: group_operator_advanced_thresholding
               algo:
                 type: otsu
-              histTransformers:
-              - type: inflate
-                fraction: 0.15
-                value: 1.0
               logX: true
               minimalSample: 20
               fallbackThreshold: 1.0

diff --git a/regression/presets/analyze/bd-rhapsody-mouse-tcr-full-length.yaml b/regression/presets/analyze/bd-rhapsody-mouse-tcr-full-length.yaml
@@ -822,10 +822,6 @@ refineTagsAndSort:
             - type: group_operator_advanced_thresholding
               algo:
                 type: otsu
-              histTransformers:
-              - type: inflate
-                fraction: 0.15
-                value: 1.0
               logX: true
               minimalSample: 20
               fallbackThreshold: 1.0
@@ -860,10 +856,6 @@ refineTagsAndSort:
             - type: group_operator_advanced_thresholding
               algo:
                 type: otsu
-              histTransformers:
-              - type: inflate
-                fraction: 0.15
-                value: 1.0
               logX: true
               minimalSample: 20
               fallbackThreshold: 1.0

diff --git a/regression/presets/analyze/bd-rhapsody-mouse-tcr-v1.yaml b/regression/presets/analyze/bd-rhapsody-mouse-tcr-v1.yaml
@@ -839,10 +839,6 @@ refineTagsAndSort:
             - type: group_operator_advanced_thresholding
               algo:
                 type: otsu
-              histTransformers:
-              - type: inflate
-                fraction: 0.15
-                value: 1.0
               logX: true
               minimalSample: 20
               fallbackThreshold: 1.0
@@ -877,10 +873,6 @@ refineTagsAndSort:
             - type: group_operator_advanced_thresholding
               algo:
                 type: otsu
-              histTransformers:
-              - type: inflate
-                fraction: 0.15
-                value: 1.0
               logX: true
               minimalSample: 20
               fallbackThreshold: 1.0

diff --git a/regression/presets/analyze/bd-rhapsody-mouse-tcr-v2.yaml b/regression/presets/analyze/bd-rhapsody-mouse-tcr-v2.yaml
@@ -839,10 +839,6 @@ refineTagsAndSort:
             - type: group_operator_advanced_thresholding
               algo:
                 type: otsu
-              histTransformers:
-              - type: inflate
-                fraction: 0.15
-                value: 1.0
               logX: true
               minimalSample: 20
               fallbackThreshold: 1.0
@@ -877,10 +873,6 @@ refineTagsAndSort:
             - type: group_operator_advanced_thresholding
               algo:
                 type: otsu
-              histTransformers:
-              - type: inflate
-                fraction: 0.15
-                value: 1.0
               logX: true
               minimalSample: 20
               fallbackThreshold: 1.0

diff --git a/regression/presets/analyze/bd-sc-xcr-rhapsody-full-length.yaml b/regression/presets/analyze/bd-sc-xcr-rhapsody-full-length.yaml
@@ -822,10 +822,6 @@ refineTagsAndSort:
             - type: group_operator_advanced_thresholding
               algo:
                 type: otsu
-              histTransformers:
-              - type: inflate
-                fraction: 0.15
-                value: 1.0
               logX: true
               minimalSample: 20
               fallbackThreshold: 1.0
@@ -860,10 +856,6 @@ refineTagsAndSort:
             - type: group_operator_advanced_thresholding
               algo:
                 type: otsu
-              histTransformers:
-              - type: inflate
-                fraction: 0.15
-                value: 1.0
               logX: true
               minimalSample: 20
               fallbackThreshold: 1.0