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Rewrite haplotype construction methods in PDHapComputationEngine #8367

Merged
merged 3 commits into from
Jul 27, 2023

validating same length in constructor

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Merged

Rewrite haplotype construction methods in PDHapComputationEngine #8367

validating same length in constructor
ee302b7
Select commit
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Failed to load commit list.
Codecov / codecov/patch succeeded Jul 27, 2023 in 0s

83.721% of diff hit (target 86.311%)

View this Pull Request on Codecov

83.721% of diff hit (target 86.311%)

Annotations

Check warning on line 240 in src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/PartiallyDeterminedHaplotypeComputationEngine.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/PartiallyDeterminedHaplotypeComputationEngine.java#L240 

Added line #L240 was not covered by tests

Check warning on line 102 in src/test/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/PartiallyDeterminedHaplotypeComputationEngineUnitTest.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/test/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/PartiallyDeterminedHaplotypeComputationEngineUnitTest.java#L102 

Added line #L102 was not covered by tests

Check warning on line 111 in src/test/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/PartiallyDeterminedHaplotypeComputationEngineUnitTest.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/test/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/PartiallyDeterminedHaplotypeComputationEngineUnitTest.java#L111 

Added line #L111 was not covered by tests

Check warning on line 120 in src/test/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/PartiallyDeterminedHaplotypeComputationEngineUnitTest.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/test/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/PartiallyDeterminedHaplotypeComputationEngineUnitTest.java#L120 

Added line #L120 was not covered by tests

Check warning on line 129 in src/test/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/PartiallyDeterminedHaplotypeComputationEngineUnitTest.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/test/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/PartiallyDeterminedHaplotypeComputationEngineUnitTest.java#L129 

Added line #L129 was not covered by tests
View more details on Codecov