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Updated Python and PyMC, removed TensorFlow, and added PyTorch in conda environment. #3546

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Updated Python and PyMC, removed TensorFlow, and added PyTorch in conda environment.

Updated Python and PyMC, removed TensorFlow, and added PyTorch in conda environment. #3546

Triggered via pull request December 12, 2023 15:59
@samuelkleesamuelklee
synchronize #8561
sl_python_version_update
Status Failure
Total duration 33m 44s
Artifacts 3

gatk-tests.yml

on: pull_request
check if the environment has privileges
0s
check if the environment has privileges
build and push gatk docker to artifacts
2m 59s
build and push gatk docker to artifacts
Validate script WDLs using womtools
58s
Validate script WDLs using womtools
Validate generated WDLs using womtools
13m 25s
Validate generated WDLs using womtools
Matrix: wdlTests
Matrix: test
Matrix: testOnDocker
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13 errors
build and push gatk docker to artifacts
buildx failed with: ERROR: failed to solve: process "/bin/sh -c export GRADLE_OPTS=\"-Xmx4048m -Dorg.gradle.daemon=false\" && /gatk/gradlew clean collectBundleIntoDir shadowTestClassJar shadowTestJar -Drelease=$RELEASE" did not complete successfully: exit code: 1
WDL test RUN_CNV_SOMATIC_WDL on cromwell
Process completed with exit code 1.
WDL test RUN_M2_WDL on cromwell
Process completed with exit code 1.
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell
Process completed with exit code 1.
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell
Process completed with exit code 1.
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell
Process completed with exit code 1.
Java 17.0.6+10 build and test unit
The v0 series of google-github-actions/setup-gcloud is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/setup-gcloud
Java 17.0.6+10 build and test unit
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/auth
Java 17.0.6+10 build and test cloud
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/auth
Java 17.0.6+10 build and test cloud
The v0 series of google-github-actions/setup-gcloud is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/setup-gcloud
Java 17.0.6+10 build and test integration
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/auth
Java 17.0.6+10 build and test integration
The v0 series of google-github-actions/setup-gcloud is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/setup-gcloud
Java 17.0.6+10 build and test integration
Process completed with exit code 1.

Artifacts

Produced during runtime
Name Size
test-results-17.0.6+10-cloud Expired
294 KB
test-results-17.0.6+10-integration Expired
4.49 MB
test-results-17.0.6+10-unit Expired
152 MB