Build and Test GATK 4

Update import_gvs.py #3541

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Triggered via pull request December 12, 2023 01:00

danking

opened #8617

danking:patch-5

Status Success

Total duration 59m 24s

Artifacts 7

gatk-tests.yml

on: pull_request

check if the environment has privileges

build and push gatk docker to artifacts

Validate script WDLs using womtools

Validate generated WDLs using womtools

Matrix: wdlTests

Matrix: test

Matrix: testOnDocker

Annotations

6 warnings

Java 17.0.6+10 build and test cloud

No files were found with the provided path: build/reports/tests. No artifacts will be uploaded.

WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell

Error: Path Validation Error: Path(s) specified in the action for caching do(es) not exist, hence no cache is being saved.

WDL test RUN_M2_WDL on cromwell

Error: Path Validation Error: Path(s) specified in the action for caching do(es) not exist, hence no cache is being saved.

WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell

Error: Path Validation Error: Path(s) specified in the action for caching do(es) not exist, hence no cache is being saved.

WDL test RUN_CNV_SOMATIC_WDL on cromwell

Error: Path Validation Error: Path(s) specified in the action for caching do(es) not exist, hence no cache is being saved.

WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell

Error: Path Validation Error: Path(s) specified in the action for caching do(es) not exist, hence no cache is being saved.

Artifacts

Produced during runtime

Name	Size
gatkDockerImage Expired	2.11 GB
test-results-17.0.6+10-integration Expired	3.46 MB
test-results-17.0.6+10-unit Expired	155 MB
test-results-docker-17.0.6+10-conda Expired	282 KB
test-results-docker-17.0.6+10-integration Expired	3.38 MB
test-results-docker-17.0.6+10-unit Expired	153 MB
test-results-docker-17.0.6+10-variantcalling Expired	235 KB