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Build and Test GATK 4

Update http-nio and wire its new settings #3514

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Update http-nio and wire its new settings

Update http-nio and wire its new settings #3514

Run time

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Job Run time
Validate generated WDLs using womtools
13m 7s
Validate generated WDLs using womtools
13m 7s
check if the environment has privileges
1s
check if the environment has privileges
1s
Validate script WDLs using womtools
6m 7s
Validate script WDLs using womtools
1m 23s
build and push gatk docker to artifacts
25m 47s
build and push gatk docker to artifacts
25m 47s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell
26m 59s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell
26m 59s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell
27m 23s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell
27m 23s
WDL test RUN_CNV_SOMATIC_WDL on cromwell
28m 29s
WDL test RUN_CNV_SOMATIC_WDL on cromwell
28m 29s
WDL test RUN_M2_WDL on cromwell
19m 43s
WDL test RUN_M2_WDL on cromwell
19m 43s
WDL test RUN_CNN_WDL on cromwell
20m 38s
WDL test RUN_CNN_WDL on cromwell
20m 38s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell
16m 59s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell
16m 59s
Java 17.0.6+10 build and test cloud
24m 42s
Java 17.0.6+10 build and test cloud
24m 42s
Java 17.0.6+10 build and test integration
32m 42s
Java 17.0.6+10 build and test integration
32m 42s
Java 17.0.6+10 build and test unit
22m 15s
Java 17.0.6+10 build and test unit
22m 15s
Java 17.0.6+10 test on docker integration
37m 56s
Java 17.0.6+10 test on docker integration
37m 56s
Java 17.0.6+10 test on docker unit
22m 41s
Java 17.0.6+10 test on docker unit
22m 41s
Java 17.0.6+10 test on docker variantcalling
32m 19s
Java 17.0.6+10 test on docker variantcalling
32m 19s
Java 17.0.6+10 test on docker conda
29m 47s
Java 17.0.6+10 test on docker conda
29m 47s
12h 50m 26s