Passing implementation of custom ploidy regions in HaplotypeCaller #3508
gatk-tests.yml
on: pull_request
check if the environment has privileges
0s
build and push gatk docker to artifacts
5m 36s
Validate script WDLs using womtools
49s
Validate generated WDLs using womtools
13m 14s
Matrix: wdlTests
Matrix: test
Matrix: testOnDocker
Annotations
19 errors and 3 warnings
Java 17.0.6+10 build and test cloud
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Java 17.0.6+10 build and test cloud
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Java 17.0.6+10 build and test cloud
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Java 17.0.6+10 build and test cloud
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Java 17.0.6+10 build and test integration
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Java 17.0.6+10 build and test integration
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Java 17.0.6+10 build and test integration
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Java 17.0.6+10 build and test integration
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Java 17.0.6+10 build and test unit
Process completed with exit code 1.
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Java 17.0.6+10 build and test unit
The v0 series of google-github-actions/setup-gcloud is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
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Java 17.0.6+10 build and test unit
Process completed with exit code 1.
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Java 17.0.6+10 build and test unit
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
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build and push gatk docker to artifacts
buildx failed with: ERROR: failed to solve: process "/bin/sh -c export GRADLE_OPTS=\"-Xmx4048m -Dorg.gradle.daemon=false\" && /gatk/gradlew clean collectBundleIntoDir shadowTestClassJar shadowTestJar -Drelease=$RELEASE" did not complete successfully: exit code: 1
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WDL test RUN_CNV_SOMATIC_WDL on cromwell
Process completed with exit code 1.
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WDL test RUN_M2_WDL on cromwell
Process completed with exit code 1.
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WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell
Process completed with exit code 1.
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WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell
Process completed with exit code 1.
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WDL test RUN_CNN_WDL on cromwell
Process completed with exit code 1.
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WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell
Process completed with exit code 1.
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Java 17.0.6+10 build and test cloud
No files were found with the provided path: build/reports/tests. No artifacts will be uploaded.
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Java 17.0.6+10 build and test integration
No files were found with the provided path: build/reports/tests. No artifacts will be uploaded.
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Java 17.0.6+10 build and test unit
No files were found with the provided path: build/reports/tests. No artifacts will be uploaded.
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