Add a native GATK implementation for 2bit references, and remove the dependency on the ADAM library #3491
droazengatk-tests.yml
on: pull_request
check if the environment has privileges
0s
build and push gatk docker to artifacts
24m 2s
Validate script WDLs using womtools
1m 46s
Validate generated WDLs using womtools
13m 53s
Matrix: wdlTests
Matrix: test
Matrix: testOnDocker
Annotations
10 errors and 5 warnings
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WDL test RUN_M2_WDL on cromwell
Process completed with exit code 1.
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Java 17.0.6+10 build and test cloud
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
https://github.com/google-github-actions/auth
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Java 17.0.6+10 build and test unit
Process completed with exit code 1.
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Java 17.0.6+10 build and test unit
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
https://github.com/google-github-actions/auth
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Java 17.0.6+10 build and test integration
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
https://github.com/google-github-actions/auth
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Java 17.0.6+10 test on docker unit
Process completed with exit code 1.
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Java 17.0.6+10 test on docker unit
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
https://github.com/google-github-actions/auth
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Java 17.0.6+10 test on docker conda
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
https://github.com/google-github-actions/auth
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Java 17.0.6+10 test on docker variantcalling
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
https://github.com/google-github-actions/auth
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Java 17.0.6+10 test on docker integration
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
https://github.com/google-github-actions/auth
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WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell
Error: Path Validation Error: Path(s) specified in the action for caching do(es) not exist, hence no cache is being saved.
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WDL test RUN_CNN_WDL on cromwell
Error: Path Validation Error: Path(s) specified in the action for caching do(es) not exist, hence no cache is being saved.
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WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell
Error: Path Validation Error: Path(s) specified in the action for caching do(es) not exist, hence no cache is being saved.
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WDL test RUN_CNV_SOMATIC_WDL on cromwell
Error: Path Validation Error: Path(s) specified in the action for caching do(es) not exist, hence no cache is being saved.
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WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell
Error: Path Validation Error: Path(s) specified in the action for caching do(es) not exist, hence no cache is being saved.
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Artifacts
Produced during runtime
| Name | Size | |
|---|---|---|
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gatkDockerImage
Expired
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2.1 GB |
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test-results-17.0.6+10-cloud
Expired
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295 KB |
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test-results-17.0.6+10-integration
Expired
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3.57 MB |
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test-results-17.0.6+10-unit
Expired
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152 MB |
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test-results-docker-17.0.6+10-conda
Expired
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281 KB |
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test-results-docker-17.0.6+10-integration
Expired
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3.49 MB |
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test-results-docker-17.0.6+10-unit
Expired
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151 MB |
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test-results-docker-17.0.6+10-variantcalling
Expired
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234 KB |
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