refactoring some stuff for clarity #3480

Job	Run time
check if the environment has privileges	1s
Validate script WDLs using womtools	47s
build and push gatk docker to artifacts	23m 22s
Validate generated WDLs using womtools	13m 5s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell	25m 33s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell	27m 51s
WDL test RUN_CNV_SOMATIC_WDL on cromwell	28m 6s
WDL test RUN_M2_WDL on cromwell	19m 59s
WDL test RUN_CNN_WDL on cromwell	19m 9s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell	16m 20s
Java 17.0.6+10 build and test cloud	15m 36s
Java 17.0.6+10 build and test integration	31m 31s
Java 17.0.6+10 build and test unit	19m 52s
Java 17.0.6+10 test on docker integration	37m 50s
Java 17.0.6+10 test on docker unit	22m 41s
Java 17.0.6+10 test on docker variantcalling	27m 27s
Java 17.0.6+10 test on docker conda	29m 28s
	5h 58m 38s

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