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Build and Test GATK 4

Bulk ingest: single FOFN + Quickstart + Beta [VS-962] [VS-984] [VS-982] #2779

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Bulk ingest: single FOFN + Quickstart + Beta [VS-962] [VS-984] [VS-982]

Bulk ingest: single FOFN + Quickstart + Beta [VS-962] [VS-984] [VS-982] #2779

Run time

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Job Run time
build and push gatk docker to artifacts
19m 11s
build and push gatk docker to artifacts
19m 11s
build and push gatk docker to artifacts
19m 11s
Validate generated WDLs using womtools
13m 31s
Validate generated WDLs using womtools
13m 31s
Validate generated WDLs using womtools
13m 31s
check if the environment has privileges
2s
check if the environment has privileges
2s
check if the environment has privileges
2s
Validate script WDLs using womtools
3m 14s
Validate script WDLs using womtools
3m 14s
Validate script WDLs using womtools
3m 14s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell
38m 42s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell
38m 42s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell
38m 42s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell
49m 40s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell
49m 40s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell
49m 40s
WDL test RUN_CNV_SOMATIC_WDL on cromwell
32m 4s
WDL test RUN_CNV_SOMATIC_WDL on cromwell
32m 4s
WDL test RUN_CNV_SOMATIC_WDL on cromwell
32m 4s
WDL test RUN_M2_WDL on cromwell
27m 46s
WDL test RUN_M2_WDL on cromwell
27m 46s
WDL test RUN_M2_WDL on cromwell
27m 46s
WDL test RUN_CNN_WDL on cromwell
25m 6s
WDL test RUN_CNN_WDL on cromwell
25m 6s
WDL test RUN_CNN_WDL on cromwell
25m 6s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell
23m 1s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell
23m 1s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell
23m 1s
Java 8 build and test cloud
17m 28s
Java 8 build and test cloud
27m 0s
Java 8 build and test cloud
27m 0s
Java 11 build and test cloud
28m 1s
Java 11 build and test cloud
28m 1s
Java 11 build and test cloud
28m 1s
Java 11 build and test integration
35m 16s
Java 11 build and test integration
35m 16s
Java 11 build and test integration
35m 16s
Java 11 build and test unit
30m 44s
Java 11 build and test unit
30m 44s
Java 11 build and test unit
30m 44s
Java 8 test on docker integration
30m 48s
Java 8 test on docker integration
48m 41s
Java 8 test on docker integration
45m 3s
Java 8 test on docker unit
40m 55s
Java 8 test on docker unit
40m 55s
Java 8 test on docker unit
40m 55s
Java 8 test on docker variantcalling
48m 40s
Java 8 test on docker variantcalling
48m 40s
Java 8 test on docker variantcalling
48m 40s
Java 8 test on docker conda
41m 45s
Java 8 test on docker conda
41m 45s
Java 8 test on docker conda
41m 45s
1d 2h 8m 54s