Build and Test GATK 4 #2738

Job	Run time
build and push gatk docker to artifacts	29m 6s
Validate script WDLs using womtools	1m 50s
check if the environment has privileges	1s
Validate generated WDLs using womtools	14m 8s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell	20m 34s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell	24m 37s
WDL test RUN_CNV_SOMATIC_WDL on cromwell	35m 32s
WDL test RUN_M2_WDL on cromwell	27m 34s
WDL test RUN_CNN_WDL on cromwell	24m 48s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell	21m 5s
Java 17.0.6+10 build and test cloud	17m 33s
Java 17.0.6+10 build and test integration	41m 31s
Java 17.0.6+10 build and test unit	34m 34s
Java 17.0.6+10 test on docker integration	1h 1m 19s
Java 17.0.6+10 test on docker unit	30m 4s
Java 17.0.6+10 test on docker variantcalling	11m 29s
Java 17.0.6+10 test on docker conda	13m 48s
	6h 49m 33s

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