Bulk ingest: single FOFN + Quickstart + Beta [VS-962] [VS-984] [VS-982] #2732

Job	Run time
build and push gatk docker to artifacts	18m 36s
Validate script WDLs using womtools	3m 20s
Validate generated WDLs using womtools	12m 37s
check if the environment has privileges	1s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell	32m 37s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell	52m 21s
WDL test RUN_CNV_SOMATIC_WDL on cromwell	43m 53s
WDL test RUN_M2_WDL on cromwell	31m 59s
WDL test RUN_CNN_WDL on cromwell	27m 57s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell	22m 27s
Java 8 build and test cloud	35m 55s
Java 11 build and test cloud	37m 2s
Java 11 build and test integration	36m 20s
Java 11 build and test unit	38m 5s
Java 8 test on docker integration	49m 45s
Java 8 test on docker unit	43m 6s
Java 8 test on docker variantcalling	52m 49s
Java 8 test on docker conda	39m 19s
	9h 38m 9s

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