Allow LocatableXsvFuncotationFactory to read gzipped files #2724

Job	Run time
Validate script WDLs using womtools	2m 20s
build and push gatk docker to artifacts	28m 26s
check if the environment has privileges	1s
Validate generated WDLs using womtools	15m 4s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell	36m 51s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell	48m 41s
WDL test RUN_CNV_SOMATIC_WDL on cromwell	43m 29s
WDL test RUN_M2_WDL on cromwell	27m 14s
WDL test RUN_CNN_WDL on cromwell	31m 57s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell	24m 46s
Java 17.0.6+10 build and test cloud	4m 35s
Java 17.0.6+10 build and test integration	48m 54s
Java 17.0.6+10 build and test unit	26m 20s
Java 17.0.6+10 test on docker integration	47m 53s
Java 17.0.6+10 test on docker unit	28m 16s
Java 17.0.6+10 test on docker variantcalling	42m 27s
Java 17.0.6+10 test on docker conda	39m 35s
	8h 16m 49s

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