Build and Test GATK 4

[DRAFT] sanity check CI on master #2708

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Triggered via pull request June 28, 2023 21:11

mcovarr

opened #8390

mlc_sanity_check_master

Status Failure

Total duration 1h 18m 59s

Artifacts 8

This run and associated checks have been archived and are scheduled for deletion. Learn more about checks retention

gatk-tests.yml

on: pull_request

check if the environment has privileges

build and push gatk docker to artifacts

Validate script WDLs using womtools

Validate generated WDLs using womtools

Matrix: wdlTests

Matrix: test

Matrix: testOnDocker

Annotations

5 errors

WDL test RUN_CNN_WDL on cromwell

Process completed with exit code 1.

WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell

Process completed with exit code 1.

WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell

Process completed with exit code 1.

WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell

Process completed with exit code 1.

Java 17.0.6+10 test on docker conda

Process completed with exit code 1.

Artifacts

Produced during runtime

Name	Size
gatkDockerImage Expired	2.07 GB
test-results-17.0.6+10-cloud Expired	331 KB
test-results-17.0.6+10-integration Expired	4.34 MB
test-results-17.0.6+10-unit Expired	155 MB
test-results-docker-17.0.6+10-conda Expired	1.15 MB
test-results-docker-17.0.6+10-integration Expired	4.26 MB
test-results-docker-17.0.6+10-unit Expired	154 MB
test-results-docker-17.0.6+10-variantcalling Expired	12.3 MB