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Build and Test GATK 4

Update Beta User WDL to use bulk ingest [VS-982] #2707

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Update Beta User WDL to use bulk ingest [VS-982]

Update Beta User WDL to use bulk ingest [VS-982] #2707

Run time

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Job Run time
Validate script WDLs using womtools
3m 28s
Validate script WDLs using womtools
3m 28s
Validate script WDLs using womtools
3m 28s
check if the environment has privileges
1s
check if the environment has privileges
1s
check if the environment has privileges
1s
build and push gatk docker to artifacts
20m 20s
build and push gatk docker to artifacts
20m 20s
build and push gatk docker to artifacts
20m 20s
Validate generated WDLs using womtools
14m 56s
Validate generated WDLs using womtools
14m 56s
Validate generated WDLs using womtools
14m 56s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell
18m 18s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell
23m 5s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell
20m 51s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell
18m 20s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell
21m 14s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell
19m 51s
WDL test RUN_CNV_SOMATIC_WDL on cromwell
32m 16s
WDL test RUN_CNV_SOMATIC_WDL on cromwell
32m 16s
WDL test RUN_CNV_SOMATIC_WDL on cromwell
32m 16s
WDL test RUN_M2_WDL on cromwell
27m 2s
WDL test RUN_M2_WDL on cromwell
27m 2s
WDL test RUN_M2_WDL on cromwell
27m 2s
WDL test RUN_CNN_WDL on cromwell
20m 56s
WDL test RUN_CNN_WDL on cromwell
23m 30s
WDL test RUN_CNN_WDL on cromwell
18m 52s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell
20m 49s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell
19m 48s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell
22m 47s
Java 8 build and test cloud
19m 9s
Java 8 build and test cloud
19m 9s
Java 8 build and test cloud
19m 9s
Java 11 build and test cloud
28m 44s
Java 11 build and test cloud
28m 44s
Java 11 build and test cloud
28m 44s
Java 11 build and test integration
36m 37s
Java 11 build and test integration
36m 37s
Java 11 build and test integration
36m 37s
Java 11 build and test unit
32m 17s
Java 11 build and test unit
32m 17s
Java 11 build and test unit
32m 17s
Java 8 test on docker integration
56m 22s
Java 8 test on docker integration
56m 22s
Java 8 test on docker integration
56m 22s
Java 8 test on docker unit
42m 44s
Java 8 test on docker unit
42m 44s
Java 8 test on docker unit
42m 44s
Java 8 test on docker variantcalling
40m 55s
Java 8 test on docker variantcalling
40m 55s
Java 8 test on docker variantcalling
40m 55s
Java 8 test on docker conda
14m 26s
Java 8 test on docker conda
14m 29s
Java 8 test on docker conda
17m 38s
22h 39m 27s