Update Beta User WDL to use bulk ingest [VS-982] #2701

Job	Run time
check if the environment has privileges	1s
build and push gatk docker to artifacts	21m 37s
Validate generated WDLs using womtools	12m 49s
Validate script WDLs using womtools	4m 8s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell	23m 7s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell	18m 44s
WDL test RUN_CNV_SOMATIC_WDL on cromwell	39m 9s
WDL test RUN_M2_WDL on cromwell	30m 41s
WDL test RUN_CNN_WDL on cromwell	25m 3s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell	18m 21s
Java 8 build and test cloud	24m 6s
Java 11 build and test cloud	31m 39s
Java 11 build and test integration	35m 40s
Java 11 build and test unit	29m 1s
Java 8 test on docker integration	1h 3m 46s
Java 8 test on docker unit	49m 9s
Java 8 test on docker variantcalling	41m 15s
Java 8 test on docker conda	14m 46s
	8h 3m 2s

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