Update Beta User WDL to use bulk ingest [VS-982] #2700

Job	Run time
build and push gatk docker to artifacts	19m 4s
Validate generated WDLs using womtools	12m 41s
check if the environment has privileges	1s
Validate script WDLs using womtools	3m 18s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell	23m 5s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell	23m 22s
WDL test RUN_CNV_SOMATIC_WDL on cromwell	36m 48s
WDL test RUN_M2_WDL on cromwell	35m 23s
WDL test RUN_CNN_WDL on cromwell	20m 6s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell	18m 31s
Java 8 build and test cloud	17m 52s
Java 11 build and test cloud	23m 34s
Java 11 build and test integration	36m 52s
Java 11 build and test unit	34m 32s
Java 8 test on docker integration	48m 24s
Java 8 test on docker unit	50m 6s
Java 8 test on docker variantcalling	59m 0s
Java 8 test on docker conda	14m 24s
	7h 57m 3s

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