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Free up space on github actions runners for all jobs. #2691

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Free up space on github actions runners for all jobs.

Free up space on github actions runners for all jobs. #2691

Triggered via pull request June 27, 2023 19:08
@cmnbroadcmnbroad
synchronize #8386
cn_fix_runners
Status Failure
Total duration 1m 9s
Artifacts –
This run and associated checks have been archived and are scheduled for deletion. Learn more about checks retention

gatk-tests.yml

on: pull_request
check if the environment has privileges
0s
check if the environment has privileges
build and push gatk docker to artifacts
3s
build and push gatk docker to artifacts
Validate script WDLs using womtools
31s
Validate script WDLs using womtools
Validate generated WDLs using womtools
25s
Validate generated WDLs using womtools
Matrix: wdlTests
Matrix: test
Matrix: testOnDocker
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48 errors and 3 warnings
build and push gatk docker to artifacts
Can't find 'action.yml', 'action.yaml' or 'Dockerfile' under '/home/runner/work/gatk/gatk/.github/actions/install-cromwell'. Did you forget to run actions/checkout before running your local action?
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell
/home/runner/work/gatk/gatk/./.github/actions/purge-runner-disk/action.yml (Line: 8, Col: 7): Required property is missing: shell
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell
/home/runner/work/gatk/gatk/./.github/actions/purge-runner-disk/action.yml (Line: 8, Col: 7): Required property is missing: shell
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell
GitHub.DistributedTask.ObjectTemplating.TemplateValidationException: The template is not valid. /home/runner/work/gatk/gatk/./.github/actions/purge-runner-disk/action.yml (Line: 8, Col: 7): Required property is missing: shell at GitHub.DistributedTask.ObjectTemplating.TemplateValidationErrors.Check() at GitHub.Runner.Worker.ActionManifestManager.ConvertRuns(IExecutionContext executionContext, TemplateContext templateContext, TemplateToken inputsToken, String fileRelativePath, MappingToken outputs) at GitHub.Runner.Worker.ActionManifestManager.Load(IExecutionContext executionContext, String manifestFile)
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell
Fail to load /home/runner/work/gatk/gatk/./.github/actions/purge-runner-disk/action.yml
Validate generated WDLs using womtools
/home/runner/work/gatk/gatk/./.github/actions/purge-runner-disk/action.yml (Line: 8, Col: 7): Required property is missing: shell
Validate generated WDLs using womtools
/home/runner/work/gatk/gatk/./.github/actions/purge-runner-disk/action.yml (Line: 8, Col: 7): Required property is missing: shell
Validate generated WDLs using womtools
GitHub.DistributedTask.ObjectTemplating.TemplateValidationException: The template is not valid. /home/runner/work/gatk/gatk/./.github/actions/purge-runner-disk/action.yml (Line: 8, Col: 7): Required property is missing: shell at GitHub.DistributedTask.ObjectTemplating.TemplateValidationErrors.Check() at GitHub.Runner.Worker.ActionManifestManager.ConvertRuns(IExecutionContext executionContext, TemplateContext templateContext, TemplateToken inputsToken, String fileRelativePath, MappingToken outputs) at GitHub.Runner.Worker.ActionManifestManager.Load(IExecutionContext executionContext, String manifestFile)
Validate generated WDLs using womtools
Fail to load /home/runner/work/gatk/gatk/./.github/actions/purge-runner-disk/action.yml
WDL test RUN_CNV_SOMATIC_WDL on cromwell
/home/runner/work/gatk/gatk/./.github/actions/purge-runner-disk/action.yml (Line: 8, Col: 7): Required property is missing: shell
WDL test RUN_CNV_SOMATIC_WDL on cromwell
/home/runner/work/gatk/gatk/./.github/actions/purge-runner-disk/action.yml (Line: 8, Col: 7): Required property is missing: shell
WDL test RUN_CNV_SOMATIC_WDL on cromwell
GitHub.DistributedTask.ObjectTemplating.TemplateValidationException: The template is not valid. /home/runner/work/gatk/gatk/./.github/actions/purge-runner-disk/action.yml (Line: 8, Col: 7): Required property is missing: shell at GitHub.DistributedTask.ObjectTemplating.TemplateValidationErrors.Check() at GitHub.Runner.Worker.ActionManifestManager.ConvertRuns(IExecutionContext executionContext, TemplateContext templateContext, TemplateToken inputsToken, String fileRelativePath, MappingToken outputs) at GitHub.Runner.Worker.ActionManifestManager.Load(IExecutionContext executionContext, String manifestFile)
WDL test RUN_CNV_SOMATIC_WDL on cromwell
Fail to load /home/runner/work/gatk/gatk/./.github/actions/purge-runner-disk/action.yml
WDL test RUN_M2_WDL on cromwell
/home/runner/work/gatk/gatk/./.github/actions/purge-runner-disk/action.yml (Line: 8, Col: 7): Required property is missing: shell
WDL test RUN_M2_WDL on cromwell
/home/runner/work/gatk/gatk/./.github/actions/purge-runner-disk/action.yml (Line: 8, Col: 7): Required property is missing: shell
WDL test RUN_M2_WDL on cromwell
GitHub.DistributedTask.ObjectTemplating.TemplateValidationException: The template is not valid. /home/runner/work/gatk/gatk/./.github/actions/purge-runner-disk/action.yml (Line: 8, Col: 7): Required property is missing: shell at GitHub.DistributedTask.ObjectTemplating.TemplateValidationErrors.Check() at GitHub.Runner.Worker.ActionManifestManager.ConvertRuns(IExecutionContext executionContext, TemplateContext templateContext, TemplateToken inputsToken, String fileRelativePath, MappingToken outputs) at GitHub.Runner.Worker.ActionManifestManager.Load(IExecutionContext executionContext, String manifestFile)
WDL test RUN_M2_WDL on cromwell
Fail to load /home/runner/work/gatk/gatk/./.github/actions/purge-runner-disk/action.yml
WDL test RUN_CNN_WDL on cromwell
/home/runner/work/gatk/gatk/./.github/actions/purge-runner-disk/action.yml (Line: 8, Col: 7): Required property is missing: shell
WDL test RUN_CNN_WDL on cromwell
/home/runner/work/gatk/gatk/./.github/actions/purge-runner-disk/action.yml (Line: 8, Col: 7): Required property is missing: shell
WDL test RUN_CNN_WDL on cromwell
GitHub.DistributedTask.ObjectTemplating.TemplateValidationException: The template is not valid. /home/runner/work/gatk/gatk/./.github/actions/purge-runner-disk/action.yml (Line: 8, Col: 7): Required property is missing: shell at GitHub.DistributedTask.ObjectTemplating.TemplateValidationErrors.Check() at GitHub.Runner.Worker.ActionManifestManager.ConvertRuns(IExecutionContext executionContext, TemplateContext templateContext, TemplateToken inputsToken, String fileRelativePath, MappingToken outputs) at GitHub.Runner.Worker.ActionManifestManager.Load(IExecutionContext executionContext, String manifestFile)
WDL test RUN_CNN_WDL on cromwell
Fail to load /home/runner/work/gatk/gatk/./.github/actions/purge-runner-disk/action.yml
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell
/home/runner/work/gatk/gatk/./.github/actions/purge-runner-disk/action.yml (Line: 8, Col: 7): Required property is missing: shell
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell
/home/runner/work/gatk/gatk/./.github/actions/purge-runner-disk/action.yml (Line: 8, Col: 7): Required property is missing: shell
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell
GitHub.DistributedTask.ObjectTemplating.TemplateValidationException: The template is not valid. /home/runner/work/gatk/gatk/./.github/actions/purge-runner-disk/action.yml (Line: 8, Col: 7): Required property is missing: shell at GitHub.DistributedTask.ObjectTemplating.TemplateValidationErrors.Check() at GitHub.Runner.Worker.ActionManifestManager.ConvertRuns(IExecutionContext executionContext, TemplateContext templateContext, TemplateToken inputsToken, String fileRelativePath, MappingToken outputs) at GitHub.Runner.Worker.ActionManifestManager.Load(IExecutionContext executionContext, String manifestFile)
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell
Fail to load /home/runner/work/gatk/gatk/./.github/actions/purge-runner-disk/action.yml
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell
/home/runner/work/gatk/gatk/./.github/actions/purge-runner-disk/action.yml (Line: 8, Col: 7): Required property is missing: shell
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell
/home/runner/work/gatk/gatk/./.github/actions/purge-runner-disk/action.yml (Line: 8, Col: 7): Required property is missing: shell
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell
GitHub.DistributedTask.ObjectTemplating.TemplateValidationException: The template is not valid. /home/runner/work/gatk/gatk/./.github/actions/purge-runner-disk/action.yml (Line: 8, Col: 7): Required property is missing: shell at GitHub.DistributedTask.ObjectTemplating.TemplateValidationErrors.Check() at GitHub.Runner.Worker.ActionManifestManager.ConvertRuns(IExecutionContext executionContext, TemplateContext templateContext, TemplateToken inputsToken, String fileRelativePath, MappingToken outputs) at GitHub.Runner.Worker.ActionManifestManager.Load(IExecutionContext executionContext, String manifestFile)
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell
Fail to load /home/runner/work/gatk/gatk/./.github/actions/purge-runner-disk/action.yml
Validate script WDLs using womtools
/home/runner/work/gatk/gatk/./.github/actions/purge-runner-disk/action.yml (Line: 8, Col: 7): Required property is missing: shell
Validate script WDLs using womtools
/home/runner/work/gatk/gatk/./.github/actions/purge-runner-disk/action.yml (Line: 8, Col: 7): Required property is missing: shell
Validate script WDLs using womtools
GitHub.DistributedTask.ObjectTemplating.TemplateValidationException: The template is not valid. /home/runner/work/gatk/gatk/./.github/actions/purge-runner-disk/action.yml (Line: 8, Col: 7): Required property is missing: shell at GitHub.DistributedTask.ObjectTemplating.TemplateValidationErrors.Check() at GitHub.Runner.Worker.ActionManifestManager.ConvertRuns(IExecutionContext executionContext, TemplateContext templateContext, TemplateToken inputsToken, String fileRelativePath, MappingToken outputs) at GitHub.Runner.Worker.ActionManifestManager.Load(IExecutionContext executionContext, String manifestFile)
Validate script WDLs using womtools
Fail to load /home/runner/work/gatk/gatk/./.github/actions/purge-runner-disk/action.yml
Java 17.0.6+10 build and test unit
Process completed with exit code 1.
Java 17.0.6+10 build and test unit
/home/runner/work/gatk/gatk/./.github/actions/purge-runner-disk/action.yml (Line: 8, Col: 7): Required property is missing: shell
Java 17.0.6+10 build and test unit
/home/runner/work/gatk/gatk/./.github/actions/purge-runner-disk/action.yml (Line: 8, Col: 7): Required property is missing: shell
Java 17.0.6+10 build and test unit
GitHub.DistributedTask.ObjectTemplating.TemplateValidationException: The template is not valid. /home/runner/work/gatk/gatk/./.github/actions/purge-runner-disk/action.yml (Line: 8, Col: 7): Required property is missing: shell at GitHub.DistributedTask.ObjectTemplating.TemplateValidationErrors.Check() at GitHub.Runner.Worker.ActionManifestManager.ConvertRuns(IExecutionContext executionContext, TemplateContext templateContext, TemplateToken inputsToken, String fileRelativePath, MappingToken outputs) at GitHub.Runner.Worker.ActionManifestManager.Load(IExecutionContext executionContext, String manifestFile)
Java 17.0.6+10 build and test unit
Fail to load /home/runner/work/gatk/gatk/./.github/actions/purge-runner-disk/action.yml
Java 17.0.6+10 build and test cloud
Process completed with exit code 1.
Java 17.0.6+10 build and test cloud
/home/runner/work/gatk/gatk/./.github/actions/purge-runner-disk/action.yml (Line: 8, Col: 7): Required property is missing: shell
Java 17.0.6+10 build and test cloud
/home/runner/work/gatk/gatk/./.github/actions/purge-runner-disk/action.yml (Line: 8, Col: 7): Required property is missing: shell
Java 17.0.6+10 build and test cloud
GitHub.DistributedTask.ObjectTemplating.TemplateValidationException: The template is not valid. /home/runner/work/gatk/gatk/./.github/actions/purge-runner-disk/action.yml (Line: 8, Col: 7): Required property is missing: shell at GitHub.DistributedTask.ObjectTemplating.TemplateValidationErrors.Check() at GitHub.Runner.Worker.ActionManifestManager.ConvertRuns(IExecutionContext executionContext, TemplateContext templateContext, TemplateToken inputsToken, String fileRelativePath, MappingToken outputs) at GitHub.Runner.Worker.ActionManifestManager.Load(IExecutionContext executionContext, String manifestFile)
Java 17.0.6+10 build and test cloud
Fail to load /home/runner/work/gatk/gatk/./.github/actions/purge-runner-disk/action.yml
Java 17.0.6+10 build and test integration
Process completed with exit code 1.
Java 17.0.6+10 build and test integration
/home/runner/work/gatk/gatk/./.github/actions/purge-runner-disk/action.yml (Line: 8, Col: 7): Required property is missing: shell
Java 17.0.6+10 build and test integration
/home/runner/work/gatk/gatk/./.github/actions/purge-runner-disk/action.yml (Line: 8, Col: 7): Required property is missing: shell
Java 17.0.6+10 build and test integration
GitHub.DistributedTask.ObjectTemplating.TemplateValidationException: The template is not valid. /home/runner/work/gatk/gatk/./.github/actions/purge-runner-disk/action.yml (Line: 8, Col: 7): Required property is missing: shell at GitHub.DistributedTask.ObjectTemplating.TemplateValidationErrors.Check() at GitHub.Runner.Worker.ActionManifestManager.ConvertRuns(IExecutionContext executionContext, TemplateContext templateContext, TemplateToken inputsToken, String fileRelativePath, MappingToken outputs) at GitHub.Runner.Worker.ActionManifestManager.Load(IExecutionContext executionContext, String manifestFile)
Java 17.0.6+10 build and test integration
Fail to load /home/runner/work/gatk/gatk/./.github/actions/purge-runner-disk/action.yml
Java 17.0.6+10 build and test unit
No files were found with the provided path: build/reports/tests. No artifacts will be uploaded.
Java 17.0.6+10 build and test cloud
No files were found with the provided path: build/reports/tests. No artifacts will be uploaded.
Java 17.0.6+10 build and test integration
No files were found with the provided path: build/reports/tests. No artifacts will be uploaded.