Build and Test GATK 4

Fixed support for newer Gencode GTF versions #2687

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Triggered via pull request June 27, 2023 17:53

jamesemery

synchronize #8351

je_fixGTFCodecForGencodeV43Support

Status Success

Total duration 1h 27m 42s

Artifacts 8

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gatk-tests.yml

on: pull_request

check if the environment has privileges

build and push gatk docker to artifacts

Validate script WDLs using womtools

Validate generated WDLs using womtools

Matrix: wdlTests

Matrix: test

Matrix: testOnDocker

Annotations

1 warning

Java 17.0.6+10 test on docker variantcalling

You are running out of disk space. The runner will stop working when the machine runs out of disk space. Free space left: 95 MB

Artifacts

Produced during runtime

Name	Size
gatkDockerImage Expired	2.07 GB
test-results-17.0.6+10-cloud Expired	331 KB
test-results-17.0.6+10-integration Expired	4.34 MB
test-results-17.0.6+10-unit Expired	155 MB
test-results-docker-17.0.6+10-conda Expired	288 KB
test-results-docker-17.0.6+10-integration Expired	4.26 MB
test-results-docker-17.0.6+10-unit Expired	154 MB
test-results-docker-17.0.6+10-variantcalling Expired	12.3 MB