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Build and Test GATK 4

VS-1422 Merge VAT changes in echo into ah_var_store #4680

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VS-1422 Merge VAT changes in echo into ah_var_store

VS-1422 Merge VAT changes in echo into ah_var_store #4680

Run time

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Job Run time
build and push gatk docker to artifacts
37m 30s
build and push gatk docker to artifacts
37m 30s
check if the environment has privileges
1s
check if the environment has privileges
1s
Validate generated WDLs using womtools
13m 18s
Validate generated WDLs using womtools
13m 18s
Validate script WDLs using womtools
32s
Validate script WDLs using womtools
1m 9s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell
44m 20s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell
44m 20s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell
45m 7s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell
45m 7s
WDL test RUN_CNV_SOMATIC_WDL on cromwell
46m 51s
WDL test RUN_CNV_SOMATIC_WDL on cromwell
46m 51s
WDL test RUN_M2_WDL on cromwell
37m 39s
WDL test RUN_M2_WDL on cromwell
37m 39s
WDL test RUN_CNN_WDL on cromwell
38m 32s
WDL test RUN_CNN_WDL on cromwell
30m 55s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell
34m 58s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell
34m 58s
Java 17.0.6+10 build and test cloud
25m 24s
Java 17.0.6+10 build and test cloud
25m 24s
Java 17.0.6+10 build and test integration
30m 22s
Java 17.0.6+10 build and test integration
30m 22s
Java 17.0.6+10 build and test unit
21m 20s
Java 17.0.6+10 build and test unit
21m 20s
Java 17.0.6+10 test on docker integration
39m 43s
Java 17.0.6+10 test on docker integration
39m 43s
Java 17.0.6+10 test on docker unit
24m 46s
Java 17.0.6+10 test on docker unit
24m 46s
Java 17.0.6+10 test on docker variantcalling
32m 57s
Java 17.0.6+10 test on docker variantcalling
32m 57s
Java 17.0.6+10 test on docker conda
29m 30s
Java 17.0.6+10 test on docker conda
29m 30s
16h 38m 40s