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(Do not merge) Port of nvscorevariants into GATK, with a basic tool frontend #4675

(Do not merge) Port of nvscorevariants into GATK, with a basic tool frontend

(Do not merge) Port of nvscorevariants into GATK, with a basic tool frontend #4675

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WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell

succeeded Sep 27, 2024 in 25m 33s