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(Do not merge) Port of nvscorevariants into GATK, with a basic tool frontend #4674

(Do not merge) Port of nvscorevariants into GATK, with a basic tool frontend

(Do not merge) Port of nvscorevariants into GATK, with a basic tool frontend #4674

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3 warnings

WDL test RUN_CNV_SOMATIC_WDL on cromwell

succeeded Sep 27, 2024 in 25m 18s