VS-1466 restructure export vcf for copy reasons #4612

Job	Run time
Validate generated WDLs using womtools	13m 23s
Validate script WDLs using womtools	1m 3s
build and push gatk docker to artifacts	25m 31s
check if the environment has privileges	1s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell	1m 58s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell	1m 51s
WDL test RUN_CNV_SOMATIC_WDL on cromwell	1m 38s
WDL test RUN_M2_WDL on cromwell	1m 34s
WDL test RUN_CNN_WDL on cromwell	1m 38s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell	1m 39s
Java 17.0.6+10 build and test cloud	16m 53s
Java 17.0.6+10 build and test integration	32m 55s
Java 17.0.6+10 build and test unit	21m 2s
Java 17.0.6+10 test on docker integration	38m 45s
Java 17.0.6+10 test on docker unit	23m 50s
Java 17.0.6+10 test on docker variantcalling	34m 9s
Java 17.0.6+10 test on docker conda	38m 32s
	4h 16m 22s

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