VS-1466 restructure export vcf for copy reasons #4604

Job	Run time
Validate script WDLs using womtools	49s
build and push gatk docker to artifacts	22m 41s
Validate generated WDLs using womtools	13m 39s
check if the environment has privileges	1s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell	30m 21s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell	32m 24s
WDL test RUN_CNV_SOMATIC_WDL on cromwell	33m 14s
WDL test RUN_M2_WDL on cromwell	23m 59s
WDL test RUN_CNN_WDL on cromwell	20m 56s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell	19m 15s
Java 17.0.6+10 build and test cloud	16m 5s
Java 17.0.6+10 build and test integration	33m 1s
Java 17.0.6+10 build and test unit	20m 17s
Java 17.0.6+10 test on docker integration	38m 5s
Java 17.0.6+10 test on docker unit	23m 6s
Java 17.0.6+10 test on docker variantcalling	34m 31s
Java 17.0.6+10 test on docker conda	29m 43s
	6h 32m 7s

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