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Build and Test GATK 4

Require both overlap and breakend proximity for depth-only SV clustering #4600

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Require both overlap and breakend proximity for depth-only SV clustering

Require both overlap and breakend proximity for depth-only SV clustering #4600

Run time

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Job Run time
build and push gatk docker to artifacts
16m 46s
Validate script WDLs using womtools
58s
Validate generated WDLs using womtools
13m 49s
check if the environment has privileges
1s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell
24m 53s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell
27m 1s
WDL test RUN_CNV_SOMATIC_WDL on cromwell
25m 26s
WDL test RUN_M2_WDL on cromwell
17m 20s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell
12m 26s
Java 17.0.6+10 build and test cloud
20m 35s
Java 17.0.6+10 build and test integration
32m 42s
Java 17.0.6+10 build and test unit
20m 24s
Java 17.0.6+10 test on docker integration
38m 36s
Java 17.0.6+10 test on docker unit
37m 19s
Java 17.0.6+10 test on docker variantcalling
33m 21s
Java 17.0.6+10 test on docker conda
25m 23s
5h 47m 0s