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Build and Test GATK 4

Adding new argument to control variant output interval filtering. #4585

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Adding new argument to control variant output interval filtering.

Adding new argument to control variant output interval filtering. #4585

Run time

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Job Run time
Validate generated WDLs using womtools
13m 21s
build and push gatk docker to artifacts
16m 42s
check if the environment has privileges
1s
Validate script WDLs using womtools
56s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell
24m 28s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell
27m 10s
WDL test RUN_CNV_SOMATIC_WDL on cromwell
24m 23s
WDL test RUN_M2_WDL on cromwell
16m 51s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell
12m 46s
Java 17.0.6+10 build and test cloud
19m 13s
Java 17.0.6+10 build and test integration
31m 53s
Java 17.0.6+10 build and test unit
20m 18s
Java 17.0.6+10 test on docker integration
36m 43s
Java 17.0.6+10 test on docker unit
22m 44s
Java 17.0.6+10 test on docker variantcalling
32m 3s
Java 17.0.6+10 test on docker conda
25m 21s
5h 24m 53s