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Build and Test GATK 4

Update Script to Handle Both Files and FOFN [VS-1441] #4575

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Update Script to Handle Both Files and FOFN [VS-1441]

Update Script to Handle Both Files and FOFN [VS-1441] #4575

Run time

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Job Run time
Validate script WDLs using womtools
3m 46s
Validate script WDLs using womtools
51s
Validate script WDLs using womtools
51s
Validate script WDLs using womtools
51s
check if the environment has privileges
1s
check if the environment has privileges
1s
check if the environment has privileges
1s
check if the environment has privileges
1s
build and push gatk docker to artifacts
23m 30s
build and push gatk docker to artifacts
22m 40s
build and push gatk docker to artifacts
22m 40s
build and push gatk docker to artifacts
22m 40s
Validate generated WDLs using womtools
14m 0s
Validate generated WDLs using womtools
13m 38s
Validate generated WDLs using womtools
13m 38s
Validate generated WDLs using womtools
13m 38s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell
31m 22s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell
16m 46s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell
15m 33s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell
15m 52s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell
33m 2s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell
17m 28s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell
15m 44s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell
16m 0s
WDL test RUN_CNV_SOMATIC_WDL on cromwell
31m 30s
WDL test RUN_CNV_SOMATIC_WDL on cromwell
15m 50s
WDL test RUN_CNV_SOMATIC_WDL on cromwell
15m 49s
WDL test RUN_CNV_SOMATIC_WDL on cromwell
16m 25s
WDL test RUN_M2_WDL on cromwell
23m 39s
WDL test RUN_M2_WDL on cromwell
16m 25s
WDL test RUN_M2_WDL on cromwell
16m 8s
WDL test RUN_M2_WDL on cromwell
16m 41s
WDL test RUN_CNN_WDL on cromwell
20m 18s
WDL test RUN_CNN_WDL on cromwell
15m 54s
WDL test RUN_CNN_WDL on cromwell
16m 22s
WDL test RUN_CNN_WDL on cromwell
15m 21s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell
18m 19s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell
15m 55s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell
16m 20s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell
15m 31s
Java 17.0.6+10 build and test cloud
27m 17s
Java 17.0.6+10 build and test cloud
16m 42s
Java 17.0.6+10 build and test cloud
16m 42s
Java 17.0.6+10 build and test cloud
16m 42s
Java 17.0.6+10 build and test integration
35m 15s
Java 17.0.6+10 build and test integration
32m 35s
Java 17.0.6+10 build and test integration
32m 35s
Java 17.0.6+10 build and test integration
32m 35s
Java 17.0.6+10 build and test unit
21m 19s
Java 17.0.6+10 build and test unit
23m 24s
Java 17.0.6+10 build and test unit
23m 24s
Java 17.0.6+10 build and test unit
23m 24s
Java 17.0.6+10 test on docker integration
38m 14s
Java 17.0.6+10 test on docker integration
39m 3s
Java 17.0.6+10 test on docker integration
39m 3s
Java 17.0.6+10 test on docker integration
39m 3s
Java 17.0.6+10 test on docker unit
23m 8s
Java 17.0.6+10 test on docker unit
23m 25s
Java 17.0.6+10 test on docker unit
23m 25s
Java 17.0.6+10 test on docker unit
23m 25s
Java 17.0.6+10 test on docker variantcalling
33m 51s
Java 17.0.6+10 test on docker variantcalling
33m 8s
Java 17.0.6+10 test on docker variantcalling
33m 8s
Java 17.0.6+10 test on docker variantcalling
33m 8s
Java 17.0.6+10 test on docker conda
31m 22s
Java 17.0.6+10 test on docker conda
30m 9s
Java 17.0.6+10 test on docker conda
30m 9s
Java 17.0.6+10 test on docker conda
30m 9s
23h 26m 45s