buildx failed with: ERROR: failed to solve: process "/bin/sh -c export GRADLE_OPTS=\"-Xmx4048m -Dorg.gradle.daemon=false\" && /gatk/gradlew clean collectBundleIntoDir shadowTestClassJar shadowTestJar -Drelease=$RELEASE" did not complete successfully: exit code: 1

Java 17.0.6+10 build and test unit

Process completed with exit code 1.

Java 17.0.6+10 build and test unit

Process completed with exit code 1.

WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell

Process completed with exit code 1.

WDL test RUN_CNV_SOMATIC_WDL on cromwell

Process completed with exit code 1.

WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell

Process completed with exit code 1.

WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell

Process completed with exit code 1.

WDL test RUN_CNN_WDL on cromwell

Process completed with exit code 1.

WDL test RUN_M2_WDL on cromwell

The hosted runner: GitHub Actions 281 lost communication with the server. Anything in your workflow that terminates the runner process, starves it for CPU/Memory, or blocks its network access can cause this error.

Validate script WDLs using womtools

The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/checkout@v3, actions/setup-java@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

Validate generated WDLs using womtools

Java 17.0.6+10 build and test cloud

No files were found with the provided path: build/reports/tests. No artifacts will be uploaded.

Java 17.0.6+10 build and test cloud

The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/checkout@v3, actions/setup-java@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

Java 17.0.6+10 build and test integration

No files were found with the provided path: build/reports/tests. No artifacts will be uploaded.

Java 17.0.6+10 build and test integration

build and push gatk docker to artifacts

The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/checkout@v3, docker/metadata-action@v4, docker/setup-buildx-action@v2, docker/build-push-action@v4. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

Java 17.0.6+10 build and test unit

No files were found with the provided path: build/reports/tests. No artifacts will be uploaded.

Java 17.0.6+10 build and test unit