Intersect target and truth for P&S [VS-1460] #4519

Job	Run time
Validate script WDLs using womtools	49s
Validate generated WDLs using womtools	13m 5s
check if the environment has privileges	1s
build and push gatk docker to artifacts	21m 48s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell	28m 29s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell	30m 52s
WDL test RUN_CNV_SOMATIC_WDL on cromwell	30m 53s
WDL test RUN_M2_WDL on cromwell	24m 15s
WDL test RUN_CNN_WDL on cromwell	22m 29s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell	19m 31s
Java 17.0.6+10 build and test cloud	25m 37s
Java 17.0.6+10 build and test integration	32m 19s
Java 17.0.6+10 build and test unit	20m 17s
Java 17.0.6+10 test on docker integration	39m 36s
Java 17.0.6+10 test on docker unit	23m 56s
Java 17.0.6+10 test on docker variantcalling	34m 0s
Java 17.0.6+10 test on docker conda	30m 18s
	6h 38m 15s

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