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Changed flow allele filtering in Mutect2 to work separately on the tumor and the normal samples #4504

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Changed flow allele filtering in Mutect2 to work separately on the tumor and the normal samples

Changed flow allele filtering in Mutect2 to work separately on the tumor and the normal samples #4504

Run time

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Job Run time
Validate generated WDLs using womtools
2m 33s
build and push gatk docker to artifacts
3m 5s
check if the environment has privileges
1s
Validate script WDLs using womtools
2m 28s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell
4m 41s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell
4m 42s
WDL test RUN_CNV_SOMATIC_WDL on cromwell
4m 29s
WDL test RUN_M2_WDL on cromwell
9m 17s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell
7m 55s
Java 17.0.6+10 build and test cloud
2m 25s
Java 17.0.6+10 build and test integration
5m 51s
Java 17.0.6+10 build and test unit
2m 29s
Java ${{ matrix.Java }} test on docker ${{ matrix.testType }}
0s
49m 56s