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[WIP] Function to copy derivatives #171

Merged
merged 36 commits into from
Apr 17, 2021
Merged

[WIP] Function to copy derivatives #171

merged 36 commits into from
Apr 17, 2021

Commits on Apr 16, 2021

  1. Added function to generate derivatives

    @Remi-Gau
    Beliy Nikita authored and Remi-Gau committed Apr 16, 2021
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  2. refactor get_metadata

    @Remi-Gau
    Remi-Gau committed Apr 16, 2021
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  3. reorganize dependencies

    @Remi-Gau
    Remi-Gau committed Apr 16, 2021
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  4. adapted query for metadata

    @Remi-Gau
    Beliy Nikita authored and Remi-Gau committed Apr 16, 2021
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  5. fix test and lint

    @Remi-Gau
    Remi-Gau committed Apr 16, 2021
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  6. remove dead code

    @Remi-Gau
    Remi-Gau committed Apr 16, 2021
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  7. minor fixes on get_metadata

    @Remi-Gau
    Remi-Gau committed Apr 16, 2021
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  8. rename functions to use snake_case

    @Remi-Gau
    Remi-Gau committed Apr 16, 2021
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  9. refactor dependency indexing

    @Remi-Gau
    Remi-Gau committed Apr 16, 2021
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  10. get rid of parse_perf

    @Remi-Gau
    Remi-Gau committed Apr 16, 2021
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  11. remove commented out dead code

    @Remi-Gau
    Remi-Gau committed Apr 16, 2021
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  12. add comments

    @Remi-Gau
    Remi-Gau committed Apr 16, 2021
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  13. remove extra IF block

    @Remi-Gau
    Remi-Gau committed Apr 16, 2021
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  14. ASL jpg file handled like other dependency files

    @Remi-Gau
    Remi-Gau committed Apr 16, 2021
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  15. update ASL query tests to make sure context file dependency is indexed

    @Remi-Gau
    Remi-Gau committed Apr 16, 2021
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  16. improving parsing of prefixes

    @Remi-Gau
    Remi-Gau committed Apr 16, 2021
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  17. silence get_metadata tests 

    their reactivation will require a public function to index and read associated metadata
    @Remi-Gau
    Remi-Gau committed Apr 16, 2021
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  18. readd subfunction deleted during rebase

    @Remi-Gau
    Remi-Gau committed Apr 16, 2021
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  19. reimplement #195

    @Remi-Gau
    Remi-Gau committed Apr 16, 2021
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  20. linting

    @Remi-Gau
    Remi-Gau committed Apr 16, 2021
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  21. linting

    @Remi-Gau
    Remi-Gau committed Apr 16, 2021
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  22. rename derivate function

    @Remi-Gau
    Remi-Gau committed Apr 16, 2021
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Commits on Apr 17, 2021

  1. move files

    @Remi-Gau
    Remi-Gau committed Apr 17, 2021
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  2. reimplement getting metadata from files in root folder

    @Remi-Gau
    Remi-Gau committed Apr 17, 2021
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  3. add test to copy_to_derivative

    @Remi-Gau
    Remi-Gau committed Apr 17, 2021
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  4. add instructions to get test data

    @Remi-Gau
    Remi-Gau committed Apr 17, 2021
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  5. filters for query can be passed as a n X 2 cell

    @Remi-Gau
    Remi-Gau committed Apr 17, 2021
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  6. add test for copy_to_derivatives on real data

    @Remi-Gau
    Remi-Gau committed Apr 17, 2021
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  7. add option to unzip and overwrite when copying to derivatives

    @Remi-Gau
    Remi-Gau committed Apr 17, 2021
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  8. move test data for copy_to_derivatives

    @Remi-Gau
    Remi-Gau committed Apr 17, 2021
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  9. add test to check fmap dependencies are copied

    @Remi-Gau
    Remi-Gau committed Apr 17, 2021
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  10. simplify tests copy derivatives 

    use bids examples by skipping the unzipping
    @Remi-Gau
    Remi-Gau committed Apr 17, 2021
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  11. move download moae function

    @Remi-Gau
    Remi-Gau committed Apr 17, 2021
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  12. update github action

    @Remi-Gau
    Remi-Gau committed Apr 17, 2021
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  13. update download moae

    @Remi-Gau
    Remi-Gau committed Apr 17, 2021
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  14. fix typo

    @Remi-Gau
    Remi-Gau committed Apr 17, 2021
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