Compare the performance of full logistic-lasso, Newton Raphson method model and optimal Logistic-LASSO with Coordinate-Wise Update
The data Down.csv consists of the expression levels of 77 proteins/protein modifications that produced detectable signals in the nuclear fraction of cortex. It has 1080 rows and 79 columns.
There are some general library requirements for the project, which are as follows.
- knitr
- survival
- quantreg
- glmnet
- caret
- MASS
- pROC
- readr
- GGally
- corrplot
- magrittr
- dplyr
- purrr
- RColorBrewer
- doParallel
pipeline.rmd includes all of the related codes.