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Breast_Cancer_Diagnosis

Compare the performance of full logistic-lasso, Newton Raphson method model and optimal Logistic-LASSO with Coordinate-Wise Update

Dataset Information

The data Down.csv consists of the expression levels of 77 proteins/protein modifications that produced detectable signals in the nuclear fraction of cortex. It has 1080 rows and 79 columns.

Requirements:

There are some general library requirements for the project, which are as follows.

  • knitr
  • survival
  • quantreg
  • glmnet
  • caret
  • MASS
  • pROC
  • readr
  • GGally
  • corrplot
  • magrittr
  • dplyr
  • purrr
  • RColorBrewer
  • doParallel

File Information

pipeline.rmd includes all of the related codes.