Add publish workflow to release Python package to PyPI #16
Workflow file for this run
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| # See the NOTICE file distributed with this work for additional information | |
| # regarding copyright ownership. | |
| # | |
| # Licensed under the Apache License, Version 2.0 (the "License"); | |
| # you may not use this file except in compliance with the License. | |
| # You may obtain a copy of the License at | |
| # | |
| # http://www.apache.org/licenses/LICENSE-2.0 | |
| # | |
| # Unless required by applicable law or agreed to in writing, software | |
| # distributed under the License is distributed on an "AS IS" BASIS, | |
| # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. | |
| # See the License for the specific language governing permissions and | |
| # limitations under the License. | |
| name: "CI" | |
| on: [push, pull_request] | |
| permissions: write-all | |
| defaults: | |
| run: | |
| working-directory: ./ | |
| env: | |
| PYTHON_VERSION: "3.9" | |
| jobs: | |
| pylint: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: ./.github/actions/python_build | |
| - name: Run pylint | |
| run: | | |
| pylint --rcfile pyproject.toml src/ensembl | |
| pylint --rcfile pyproject.toml tests | |
| mypy: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: ./.github/actions/python_build | |
| - name: Run mypy | |
| run: | | |
| mypy --config-file pyproject.toml src/ensembl | |
| mypy --config-file pyproject.toml tests | |
| black: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: ./.github/actions/python_build | |
| - name: Run black | |
| run: | | |
| black --config pyproject.toml --check . | |
| pytest_and_docs: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: ./.github/actions/python_build | |
| - name: Run pytest with coverage | |
| run: | | |
| coverage run -m pytest --junitxml=./reports/test-results-${{ env.PYTHON_VERSION }}.xml | |
| coverage xml -o ./reports/coverage.xml | |
| coverage report -m | |
| - name: Add coverage reports | |
| if: ${{ github.event_name == 'pull_request' }} | |
| uses: MishaKav/pytest-coverage-comment@main | |
| with: | |
| pytest-xml-coverage-path: ./reports/coverage.xml | |
| junitxml-path: ./reports/test-results-${{ env.PYTHON_VERSION }}.xml | |
| - name: Deploy documentation to GitHub Pages | |
| if: ${{ github.event_name == 'push' && github.ref_name == 'main' }} | |
| run: | | |
| coverage html -d ./reports/htmlcov | |
| genbadge coverage -i ./reports/coverage.xml -o ./reports/htmlcov/coverage-badge.svg | |
| mkdocs gh-deploy --force |